Os06g0486400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0486400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.99 | 0.348 | 9.5 | 0.488 | 0.808 | -0.541 | -0.552 | 7.04 | -0.166 | 8.38 | 30 | 1348 | -- | -- |
| 59.46 | 0.359 | 9.65 | -0.955 | 0.898 | 0.437 | -0.776 | -- | -0.155 | 8.12 | 32.03 | 4066 | -- | -- |
| 55.84 | 0.348 | 9.5 | 0.456 | 0.811 | -0.555 | -- | 7.3 | -0.16 | 8.45 | 30 | 1242 | -- | -- |
| 59.58 | 0.36 | 9.67 | -1.02 | 0.84 | 0.45 | -- | -- | -0.217 | 8.45 | 32.09 | 4086 | -- | -- |
| 91.93 | 0.447 | 9.49 | 0.775 | -- | -0.696 | -- | 8.2 | -0.145 | -- | 30 | 1402 | -- | -- |
| 63.91 | 0.375 | 9.69 | -0.897 | 0.832 | -- | -0.605 | -- | -0.3 | 8.23 | -- | -- | -- | -- |
| 65.03 | 0.378 | 9.69 | -0.914 | 0.832 | -- | -- | -- | -0.3 | 8.26 | -- | -- | -- | -- |
| 96.95 | 0.459 | 9.7 | -1.01 | -- | 0.347 | -- | -- | -0.272 | -- | 32 | 5805 | -- | -- |
| 85.33 | 0.43 | 9.65 | -- | 0.838 | 0.252 | -- | -- | -0.151 | 8.41 | 32.1 | 4074 | -- | -- |
| 103.33 | 0.475 | 9.71 | -0.908 | -- | -- | -- | -- | -0.291 | -- | -- | -- | -- | -- |
| 87.06 | 0.436 | 9.66 | -- | 0.828 | -- | -- | -- | -0.198 | 8.34 | -- | -- | -- | -- |
| 112.03 | 0.493 | 9.64 | -- | -- | -0.52 | -- | -- | 0.0193 | -- | 27.3 | 47520 | -- | -- |
| 125.1 | 0.522 | 9.68 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.20 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 3 | 53.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 5 | 53.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 5 |
| 9 | 53.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 7 |
| 12 | 53.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 53 | 54.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 9 |
| 55 | 54.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 57 | 54.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 60 | 54.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 61 | 54.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 63 | 54.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 67 | 54.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 71 | 54.37 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 72 | 54.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 100 | 54.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 102 | 54.61 | temperature | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 103 | 54.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 118 | 54.75 | humidity | 60 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 141 | 54.95 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 182 | 55.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 10 |
| 216 | 55.12 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 219 | 55.15 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 334 | 55.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 335 | 55.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 339 | 55.23 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 341 | 55.25 | humidity | 60 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 361 | 55.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 367 | 55.30 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 15 |
| 368 | 55.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 371 | 55.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 380 | 55.34 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 418 | 55.44 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 419 | 55.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 420 | 55.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 423 | 55.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 429 | 55.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 432 | 55.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 433 | 55.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 474 | 55.55 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 491 | 55.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 493 | 55.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 498 | 55.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 515 | 55.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 519 | 55.59 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 521 | 55.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 532 | 55.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 618 | 55.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 619 | 55.69 | humidity | 80 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 663 | 55.77 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 679 | 55.80 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 738 | 55.88 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 756 | 55.93 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 759 | 55.94 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 794 | 55.96 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 801 | 55.96 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 805 | 55.96 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 17 |
| 819 | 55.97 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 844 | 56.00 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 867 | 56.02 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 903 | 56.05 | humidity | 60 | 14400 | > th | dose independent | sin | 21 | NA |
| 912 | 56.06 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 920 | 56.07 | humidity | 60 | 14400 | > th | dose independent | no | NA | NA |
| 925 | 56.07 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 960 | 56.07 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 19 |