Os06g0486300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mlo.
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Os06g0486300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mlo.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.63 | 0.761 | 3.08 | 0.186 | 0.431 | 0.906 | 0.111 | -4.69 | 0.099 | 18.8 | 0.8034 | 78 | -- | -- |
| 268.33 | 0.763 | 3.05 | 0.297 | 0.396 | 0.371 | 0.186 | -- | 0.0869 | 18.8 | 0.7998 | 59 | -- | -- |
| 262.65 | 0.755 | 3.08 | 0.185 | 0.43 | 0.902 | -- | -4.73 | 0.0987 | 18.8 | 0.8 | 78 | -- | -- |
| 267.83 | 0.767 | 3.05 | 0.351 | 0.35 | -0.45 | -- | -- | 0.0663 | 19.4 | 0.3 | 59 | -- | -- |
| 271.32 | 0.767 | 3.07 | 0.219 | -- | 0.53 | -- | -4.21 | 0.0735 | -- | 0.8 | 79 | -- | -- |
| 269.46 | 0.77 | 3.05 | 0.33 | 0.361 | -- | 0.188 | -- | 0.0756 | 19.1 | -- | -- | -- | -- |
| 269.55 | 0.769 | 3.05 | 0.326 | 0.362 | -- | -- | -- | 0.076 | 19.1 | -- | -- | -- | -- |
| 273.8 | 0.771 | 3.04 | 0.401 | -- | -0.315 | -- | -- | 0.0595 | -- | 5.1 | 304 | -- | -- |
| 270.59 | 0.766 | 3.05 | -- | 0.395 | 0.535 | -- | -- | 0.0729 | 18.9 | 0.03116 | 59 | -- | -- |
| 276.45 | 0.777 | 3.04 | 0.319 | -- | -- | -- | -- | 0.0696 | -- | -- | -- | -- | -- |
| 272.35 | 0.772 | 3.05 | -- | 0.358 | -- | -- | -- | 0.0397 | 19.2 | -- | -- | -- | -- |
| 277.6 | 0.779 | 3.05 | -- | -- | -0.418 | -- | -- | 0.0236 | -- | 0.03116 | 59 | -- | -- |
| 279.13 | 0.78 | 3.05 | -- | -- | -- | -- | -- | 0.0342 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.06 | wind | 1 | 30 | > th | dose dependent | rect. | 14 | 9 |
| 2 | 253.18 | wind | 5 | 30 | > th | dose independent | rect. | 14 | 8 |
| 18 | 253.97 | wind | 5 | 30 | > th | dose independent | rect. | 14 | 12 |
| 23 | 254.20 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 31 | 254.51 | wind | 5 | 30 | > th | dose independent | rect. | 14 | 16 |
| 60 | 255.72 | wind | 5 | 30 | > th | dose independent | sin | 15 | NA |
| 62 | 255.85 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 2 |
| 68 | 255.99 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 15 | 4 |
| 69 | 256.00 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 3 |
| 74 | 256.22 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 76 | 256.38 | wind | 1 | 30 | > th | dose dependent | rect. | 12 | 11 |
| 78 | 256.51 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 19 | 23 |
| 81 | 256.54 | radiation | 1 | 10 | < th | dose independent | rect. | 11 | 3 |
| 89 | 256.54 | radiation | 1 | 10 | < th | dose dependent | rect. | 11 | 3 |
| 114 | 256.57 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 1 |
| 119 | 256.58 | radiation | 1 | 10 | < th | dose independent | rect. | 13 | 1 |
| 129 | 256.58 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 140 | 256.62 | temperature | 20 | 30 | < th | dose dependent | rect. | 12 | 2 |
| 143 | 256.63 | temperature | 20 | 30 | < th | dose independent | rect. | 12 | 2 |
| 148 | 256.68 | wind | 5 | 30 | > th | dose dependent | rect. | 15 | 12 |
| 157 | 256.77 | wind | 5 | 30 | > th | dose dependent | sin | 14 | NA |
| 161 | 256.81 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 1 |
| 166 | 256.83 | wind | 5 | 30 | > th | dose dependent | rect. | 15 | 15 |
| 192 | 257.20 | wind | 5 | 30 | > th | dose independent | rect. | 12 | 10 |
| 202 | 257.28 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 205 | 257.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 212 | 257.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 218 | 257.41 | temperature | 25 | 90 | < th | dose independent | rect. | 14 | 7 |
| 221 | 257.44 | wind | 5 | 10 | > th | dose independent | rect. | 15 | 5 |
| 225 | 257.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 226 | 257.49 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 16 |
| 228 | 257.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 236 | 257.58 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 14 | 9 |
| 252 | 257.75 | temperature | 25 | 90 | < th | dose independent | rect. | 14 | 3 |
| 258 | 257.79 | wind | 5 | 30 | > th | dose independent | rect. | 12 | 14 |
| 271 | 257.84 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 1 |
| 273 | 257.87 | temperature | 25 | 10 | < th | dose independent | rect. | 15 | 1 |
| 310 | 258.09 | wind | 5 | 30 | > th | dose dependent | rect. | 12 | 15 |
| 311 | 258.10 | wind | 5 | 30 | > th | dose independent | rect. | 12 | 18 |
| 318 | 258.12 | wind | 5 | 10 | < th | dose independent | rect. | 19 | 7 |
| 323 | 258.13 | wind | 3 | 30 | > th | dose dependent | rect. | 15 | 5 |
| 331 | 258.17 | wind | 5 | 30 | < th | dose independent | rect. | 13 | 13 |
| 347 | 258.23 | wind | 5 | 30 | > th | dose dependent | rect. | 12 | 18 |
| 357 | 258.27 | wind | 7 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 359 | 258.27 | wind | 1 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 366 | 258.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 7 |
| 379 | 258.36 | wind | 5 | 30 | < th | dose independent | sin | 16 | NA |
| 424 | 258.57 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 7 |
| 426 | 258.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 441 | 258.62 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 5 |
| 455 | 258.64 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 5 |
| 468 | 258.68 | wind | 5 | 90 | < th | dose independent | rect. | 7 | 19 |
| 488 | 258.71 | wind | 1 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 495 | 258.74 | wind | 7 | 30 | < th | dose dependent | rect. | 13 | 13 |
| 508 | 258.82 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 1 |
| 528 | 258.93 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 15 | 8 |
| 531 | 258.95 | wind | 1 | 30 | < th | dose independent | rect. | 3 | 1 |
| 575 | 259.04 | wind | 9 | 90 | < th | dose dependent | rect. | 7 | 19 |
| 578 | 259.05 | wind | 9 | 90 | < th | dose dependent | sin | 18 | NA |
| 605 | 259.09 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 759 | 259.45 | humidity | 90 | 90 | > th | dose independent | rect. | 2 | 19 |
| 783 | 259.52 | radiation | 30 | 270 | < th | dose independent | rect. | 19 | 16 |
| 816 | 259.61 | radiation | 1 | 270 | < th | dose independent | rect. | 24 | 19 |
| 844 | 259.67 | humidity | 60 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 848 | 259.68 | wind | 1 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 862 | 259.71 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 12 |
| 902 | 259.79 | temperature | 30 | 10 | < th | dose independent | rect. | 18 | 1 |
| 911 | 259.82 | humidity | 70 | 90 | > th | dose independent | rect. | 18 | 1 |
| 926 | 259.84 | atmosphere | 995 | 90 | > th | dose independent | rect. | 2 | 17 |
| 934 | 259.86 | wind | 3 | 720 | > th | dose independent | rect. | 11 | 2 |
| 973 | 259.97 | wind | 7 | 270 | < th | dose independent | rect. | 4 | 23 |
| 979 | 259.98 | atmosphere | 995 | 270 | > th | dose independent | rect. | 24 | 19 |
| 981 | 259.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 986 | 259.99 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 15 | 2 |
| 992 | 260.00 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 7 |