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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0486000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0155) R2 : 0.00319
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0394 (0.0326) R2dN8 : 0.00412 R2N8 : 0.00319
σ : 0.291
deviance : 38.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.4 0.287 2.95 0.13 0.208 0.204 -0.421 -0.665 0.0717 12.1 0.04 101 -- --
38.08 0.29 2.96 0.0764 0.107 0.111 0.294 -- 0.0552 11.6 0.04 101 -- --
37.4 0.285 2.95 0.132 0.199 0.199 -- -0.335 0.067 12.3 0.03534 129 -- --
38 0.287 2.95 0.108 0.204 0.202 -- -- 0.0689 12.8 1.214e-06 126 -- --
37.96 0.287 2.95 0.123 -- 0.0623 -- -0.284 0.0586 -- 0.04 151 -- --
38.33 0.29 2.96 0.0687 0.0267 -- -0.321 -- 0.0459 1.51 -- -- -- --
38.74 0.291 2.96 0.0793 0.027 -- -- -- 0.0477 1.83 -- -- -- --
38.53 0.289 2.96 0.0771 -- 0.0455 -- -- 0.0494 -- 0.05444 142 -- --
38.24 0.288 2.96 -- 0.197 0.205 -- -- 0.0631 12.9 1.068e-06 144 -- --
38.79 0.291 2.96 0.0804 -- -- -- -- 0.0483 -- -- -- -- --
38.91 0.292 2.96 -- 0.0285 -- -- -- 0.0388 1.91 -- -- -- --
38.7 0.29 2.96 -- -- 0.0508 -- -- 0.0427 -- 0.02999 126 -- --
38.96 0.291 2.96 -- -- -- -- -- 0.0394 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.59 temperature 10.0 1440 > th dose independent rect. 21 1
4 31.59 temperature 30.0 1440 < th dose independent rect. 21 1
8 31.59 humidity 50.0 1440 > th dose independent rect. 21 1
14 31.59 atmosphere 995.0 1440 > th dose independent rect. 21 1
15 31.59 radiation 1.0 1440 < th dose independent rect. 21 1
35 31.59 temperature 10.0 1440 > th dose independent rect. 22 23
38 31.60 radiation 30.0 1440 < th dose dependent rect. 21 1
43 31.66 temperature 25.0 30 > th dose independent rect. 20 1
44 31.66 atmosphere 1005.0 30 > th dose dependent rect. 20 1
48 31.69 wind 9.0 30 < th dose independent rect. 21 23
51 31.70 wind 3.0 30 > th dose independent rect. 20 1
52 31.71 humidity 80.0 30 > th dose independent rect. 20 1
55 31.72 humidity 90.0 30 < th dose independent rect. 20 1
56 31.72 atmosphere 1005.0 30 > th dose independent rect. 20 1
57 31.72 temperature 20.0 30 > th dose dependent rect. 20 1
63 31.76 wind 1.0 30 > th dose dependent rect. 20 1
66 31.77 wind 5.0 30 < th dose independent rect. 20 1
72 31.79 temperature 10.0 30 > th dose independent rect. 20 1
74 31.79 temperature 30.0 30 < th dose independent rect. 20 1
75 31.79 humidity 50.0 30 > th dose independent rect. 20 1
79 31.79 atmosphere 1010.0 30 < th dose independent rect. 20 1
81 31.79 radiation 1.0 30 < th dose independent rect. 20 1
86 31.79 precipitation 0.1 30 < th dose independent rect. 20 1
87 31.79 temperature 10.0 30 > th dose independent rect. 21 23
88 31.79 radiation 1.0 30 < th dose dependent rect. 20 1
94 31.79 precipitation 0.1 30 < th dose dependent rect. 20 1
95 31.80 humidity 50.0 30 > th dose dependent rect. 20 1
98 31.82 wind 9.0 30 < th dose dependent rect. 20 1
101 31.89 humidity 90.0 30 < th dose dependent rect. 20 1
106 31.96 atmosphere 1015.0 30 < th dose dependent rect. 20 1
109 32.00 temperature 30.0 30 < th dose dependent rect. 20 1
113 32.07 wind 9.0 1440 < th dose independent rect. 21 1
169 32.98 atmosphere 995.0 30 > th dose independent rect. 21 23
172 33.20 precipitation 0.1 30 < th dose independent rect. 21 23
173 33.20 precipitation 0.1 30 < th dose dependent rect. 21 23
194 34.26 precipitation 0.1 1440 < th dose independent rect. 21 1
195 34.26 precipitation 0.1 1440 < th dose dependent rect. 21 1
200 34.39 humidity 50.0 30 > th dose independent rect. 21 23
213 34.98 atmosphere 1015.0 30 < th dose independent rect. 21 23
252 35.30 wind 1.0 30 > th dose independent rect. 21 23
262 35.45 temperature 10.0 30 > th dose dependent rect. 21 23
288 35.88 temperature 30.0 30 < th dose independent rect. 21 23
299 36.03 radiation 20.0 10 < th dose dependent rect. 21 23
303 36.10 atmosphere 1005.0 90 > th dose dependent rect. 2 1
326 36.21 radiation 10.0 10 < th dose independent rect. 21 23
338 36.26 atmosphere 1005.0 90 > th dose independent rect. 2 1
348 36.30 wind 9.0 30 < th dose dependent rect. 21 23
365 36.37 humidity 90.0 90 < th dose independent rect. 2 1
410 36.49 temperature 10.0 10 > th dose dependent rect. 4 16
422 36.53 temperature 25.0 10 > th dose independent rect. 22 22
433 36.58 atmosphere 995.0 10 > th dose dependent rect. 20 8
434 36.59 wind 5.0 90 < th dose independent rect. 2 1
435 36.59 atmosphere 1005.0 10 > th dose independent rect. 2 2
438 36.60 wind 3.0 30 > th dose independent rect. 20 16
439 36.60 temperature 10.0 10 > th dose dependent rect. 20 8
440 36.61 precipitation 0.1 720 < th dose independent rect. 15 6
443 36.61 precipitation 0.1 720 < th dose dependent rect. 15 6
444 36.62 atmosphere 995.0 720 > th dose independent rect. 21 18
445 36.62 radiation 1.0 14400 < th dose dependent rect. 3 1
448 36.63 atmosphere 995.0 30 > th dose independent rect. 3 23
455 36.64 humidity 60.0 720 > th dose independent rect. 3 6
463 36.65 wind 5.0 30 < th dose independent rect. 20 8
464 36.65 precipitation 0.1 720 < th dose independent rect. 9 18
465 36.65 wind 7.0 90 < th dose dependent rect. 2 1
467 36.65 temperature 10.0 90 > th dose dependent rect. 2 1
468 36.65 precipitation 0.1 720 < th dose dependent rect. 9 18
469 36.66 wind 1.0 720 > th dose independent rect. 15 6
470 36.66 wind 9.0 720 < th dose independent rect. 3 6
471 36.66 temperature 10.0 720 > th dose independent rect. 3 6
473 36.66 atmosphere 995.0 720 > th dose independent rect. 3 6
474 36.66 temperature 10.0 720 > th dose independent rect. 9 18
482 36.68 atmosphere 1015.0 720 < th dose independent rect. 3 6
487 36.69 wind 9.0 720 < th dose independent rect. 15 6
488 36.69 temperature 10.0 720 > th dose independent rect. 15 6
489 36.69 temperature 10.0 720 > th dose independent rect. 21 18
490 36.69 temperature 25.0 90 > th dose dependent rect. 2 1
494 36.70 temperature 25.0 90 > th dose independent rect. 2 1
497 36.70 radiation 40.0 720 < th dose independent rect. 15 6
499 36.70 wind 9.0 10 < th dose independent rect. 3 23
512 36.71 temperature 10.0 90 > th dose independent rect. 2 1
514 36.71 temperature 30.0 90 < th dose independent rect. 2 1
515 36.71 humidity 90.0 30 > th dose independent rect. 2 1
516 36.71 humidity 50.0 90 > th dose independent rect. 2 1
519 36.71 atmosphere 995.0 90 > th dose independent rect. 2 1
521 36.71 atmosphere 1010.0 90 < th dose independent rect. 2 1
523 36.71 radiation 1.0 90 < th dose independent rect. 2 1
528 36.71 precipitation 0.1 90 < th dose independent rect. 2 1
530 36.71 precipitation 0.1 720 < th dose independent rect. 3 6
531 36.71 temperature 25.0 10 > th dose independent rect. 24 20
533 36.71 temperature 10.0 90 > th dose independent rect. 3 23
540 36.71 radiation 1.0 90 < th dose dependent rect. 2 1
545 36.71 precipitation 0.1 90 < th dose dependent rect. 2 1
546 36.71 precipitation 0.1 720 < th dose dependent rect. 3 6
576 36.72 precipitation 0.1 90 < th dose independent rect. 3 23
579 36.72 humidity 50.0 30 > th dose dependent rect. 2 1
585 36.72 atmosphere 1015.0 30 < th dose dependent rect. 2 1
599 36.72 precipitation 0.1 90 < th dose dependent rect. 3 23
600 36.73 wind 9.0 1440 < th dose independent rect. 3 1
602 36.73 temperature 10.0 1440 > th dose independent rect. 3 1
605 36.73 temperature 30.0 1440 < th dose independent rect. 3 1
609 36.73 humidity 50.0 1440 > th dose independent rect. 3 1
619 36.73 atmosphere 995.0 1440 > th dose independent rect. 3 1
620 36.73 radiation 1.0 1440 < th dose independent rect. 3 1
640 36.73 atmosphere 1015.0 720 < th dose independent rect. 15 6
641 36.73 temperature 10.0 1440 > th dose independent rect. 4 23
646 36.73 radiation 1.0 1440 < th dose dependent rect. 3 1
669 36.74 temperature 30.0 30 < th dose dependent rect. 2 1
672 36.75 precipitation 0.1 720 < th dose independent rect. 21 18
681 36.75 precipitation 0.1 720 < th dose dependent rect. 21 18
683 36.76 wind 1.0 30 > th dose independent rect. 2 1
695 36.77 atmosphere 995.0 10 > th dose independent rect. 4 16
722 36.78 temperature 30.0 720 < th dose independent rect. 3 6
742 36.80 atmosphere 1015.0 10 < th dose independent rect. 20 8
743 36.80 wind 7.0 90 < th dose independent rect. 3 16
751 36.81 atmosphere 995.0 90 > th dose independent rect. 4 15
752 36.81 wind 9.0 10 < th dose independent rect. 4 16
796 36.84 humidity 80.0 10 > th dose independent rect. 20 8
798 36.84 precipitation 0.1 10 < th dose independent rect. 20 8
799 36.84 humidity 50.0 720 > th dose independent rect. 21 18
806 36.84 precipitation 0.1 10 < th dose dependent rect. 20 8
821 36.86 atmosphere 1010.0 90 < th dose independent rect. 3 16
839 36.88 temperature 10.0 10 > th dose independent rect. 20 8
840 36.88 temperature 30.0 10 < th dose independent rect. 20 8
841 36.88 humidity 50.0 10 > th dose independent rect. 20 8
844 36.88 atmosphere 995.0 10 > th dose independent rect. 20 8
845 36.88 radiation 1.0 10 < th dose independent rect. 20 8
850 36.88 temperature 10.0 10 > th dose independent rect. 4 16
852 36.88 atmosphere 1015.0 10 < th dose independent rect. 4 16
853 36.88 precipitation 0.1 10 < th dose independent rect. 4 16
858 36.88 radiation 1.0 10 < th dose dependent rect. 20 8
864 36.88 precipitation 0.1 10 < th dose dependent rect. 4 16
944 36.91 radiation 40.0 90 < th dose dependent rect. 21 12
948 36.92 humidity 50.0 720 > th dose independent rect. 15 6
972 36.92 wind 9.0 10 < th dose dependent rect. 20 8
993 36.93 radiation 40.0 30 < th dose independent rect. 21 23