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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0483400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0344) R2 : 0.275
β1 : 1.35 (0.128) R2dD : 0.203 R2D : 0.0807
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.02 (0.0993) R2dE : 0.227 R2E : 0.0613
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.313 (0.0814) R2dN8 : 0.0415 R2N8 : -0.073
σ : 0.622
deviance : 178.32
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.85
memory length : 2344
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.91 0.621 3.36 1.42 0.265 0.983 0.855 -0.167 0.338 9.9 23.5 2939 -- --
174.64 0.615 3.36 1.37 0.271 1.04 0.877 -- 0.355 9.83 22.98 2816 -- --
175.79 0.618 3.38 1.27 0.188 1.02 -- 0.305 0.299 8.09 22.8 2356 -- --
175.97 0.618 3.37 1.34 0.206 0.991 -- -- 0.303 8.77 22.81 2356 -- --
177.96 0.621 3.39 1.21 -- 1.02 -- 0.397 0.284 -- 22.8 2341 -- --
211.16 0.681 3.46 0.914 0.288 -- 0.863 -- -0.0959 10.6 -- -- -- --
214.13 0.685 3.46 0.947 0.29 -- -- -- -0.0946 9.99 -- -- -- --
178.32 0.622 3.38 1.35 -- 1.02 -- -- 0.313 -- 22.85 2344 -- --
219.27 0.69 3.4 -- 0.223 0.637 -- -- 0.0953 8.87 22.9 2275 -- --
219.18 0.692 3.47 0.943 -- -- -- -- -0.0947 -- -- -- -- --
237.76 0.721 3.48 -- 0.287 -- -- -- -0.2 9.75 -- -- -- --
221.57 0.693 3.44 -- -- 0.692 -- -- 0.0471 -- 22.9 2275 -- --
242.66 0.727 3.49 -- -- -- -- -- -0.199 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.40 temperature 10.0 720 > th dose dependent rect. 21 18
2 169.47 wind 9.0 43200 > th dose dependent rect. 18 13
4 170.12 wind 9.0 43200 > th dose independent rect. 18 13
9 170.63 temperature 10.0 10 > th dose dependent rect. 3 23
14 171.05 temperature 10.0 720 > th dose dependent rect. 3 6
15 171.12 wind 9.0 43200 < th dose independent rect. 18 14
30 171.96 wind 9.0 43200 > th dose independent rect. 18 6
36 172.18 wind 9.0 43200 > th dose dependent rect. 18 6
44 172.37 wind 9.0 43200 < th dose independent rect. 18 9
47 172.52 wind 9.0 43200 < th dose independent rect. 18 11
54 172.72 temperature 15.0 720 > th dose dependent sin 7 NA
70 173.50 temperature 30.0 720 < th dose dependent rect. 23 12
72 173.66 temperature 30.0 720 < th dose dependent rect. 24 10
74 173.78 temperature 30.0 720 < th dose dependent sin 7 NA
79 173.87 temperature 30.0 720 < th dose dependent rect. 20 16
89 174.10 temperature 20.0 1440 > th dose dependent rect. 18 3
94 174.23 temperature 20.0 1440 > th dose dependent rect. 18 1
95 174.25 temperature 15.0 720 > th dose dependent rect. 21 13
120 174.56 temperature 25.0 4320 < th dose dependent rect. 3 1
122 174.62 temperature 20.0 1440 > th dose dependent rect. 17 9
123 174.63 temperature 20.0 1440 > th dose dependent rect. 17 11
137 174.73 wind 7.0 43200 > th dose independent rect. 6 1
160 174.90 temperature 10.0 4320 > th dose dependent rect. 3 1
166 174.92 temperature 30.0 4320 < th dose dependent rect. 21 7
176 174.96 temperature 10.0 4320 > th dose dependent rect. 21 7
183 174.98 temperature 10.0 4320 > th dose dependent rect. 21 5
184 174.99 temperature 30.0 4320 < th dose dependent rect. 21 5
202 175.07 temperature 30.0 1440 < th dose dependent rect. 18 1
213 175.11 temperature 25.0 4320 < th dose dependent rect. 24 1
226 175.16 temperature 30.0 4320 < th dose dependent rect. 21 2
227 175.16 temperature 10.0 720 > th dose dependent rect. 2 13
291 175.37 temperature 10.0 4320 > th dose dependent rect. 24 1
356 175.51 wind 7.0 43200 < th dose independent rect. 6 1
387 175.57 temperature 20.0 1440 > th dose dependent sin 13 NA
415 175.62 temperature 30.0 1440 < th dose dependent rect. 17 4
501 175.81 temperature 15.0 30 > th dose dependent rect. 21 23
508 175.82 temperature 10.0 720 > th dose dependent rect. 3 11
576 175.92 temperature 25.0 4320 < th dose dependent sin 14 NA
643 176.02 precipitation 0.1 43200 > th dose dependent rect. 20 2
654 176.04 atmosphere 995.0 43200 > th dose independent rect. 7 8
655 176.04 temperature 10.0 4320 > th dose dependent sin 12 NA
668 176.06 atmosphere 995.0 43200 < th dose independent rect. 7 9
717 176.14 wind 9.0 43200 < th dose independent rect. 18 4
742 176.18 atmosphere 995.0 43200 < th dose independent rect. 9 6
751 176.18 temperature 10.0 720 > th dose dependent rect. 12 21
757 176.20 atmosphere 995.0 43200 < th dose independent rect. 11 4
894 176.42 atmosphere 995.0 43200 < th dose dependent rect. 14 2
911 176.44 wind 9.0 43200 > th dose independent sin 11 NA