Os06g0481000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0481000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.65 | 0.354 | 8.87 | -0.447 | 1.47 | -0.586 | -0.39 | 0.989 | -0.535 | 22.1 | 90.66 | 641 | -- | -- |
| 58.03 | 0.355 | 8.87 | -0.366 | 1.44 | -0.598 | -0.731 | -- | -0.517 | 22 | 90 | 751 | -- | -- |
| 57.04 | 0.352 | 8.87 | -0.471 | 1.49 | -0.566 | -- | 1.3 | -0.538 | 22 | 91 | 622 | -- | -- |
| 60.37 | 0.362 | 8.87 | -0.337 | 1.46 | -0.576 | -- | -- | -0.522 | 22.1 | 90 | 634 | -- | -- |
| 161.84 | 0.593 | 8.86 | -0.261 | -- | -1.07 | -- | 1.39 | -0.295 | -- | 82.45 | 706 | -- | -- |
| 63.72 | 0.374 | 8.86 | -0.409 | 1.64 | -- | -0.68 | -- | -0.424 | 21.9 | -- | -- | -- | -- |
| 65.5 | 0.379 | 8.86 | -0.383 | 1.64 | -- | -- | -- | -0.423 | 21.9 | -- | -- | -- | -- |
| 138.71 | 0.549 | 8.85 | -0.263 | -- | -1.76 | -- | -- | -0.616 | -- | 79.12 | 778 | -- | -- |
| 63.2 | 0.37 | 8.87 | -- | 1.45 | -0.628 | -- | -- | -0.492 | 22 | 89.98 | 754 | -- | -- |
| 226.38 | 0.703 | 8.81 | -0.365 | -- | -- | -- | -- | -0.423 | -- | -- | -- | -- | -- |
| 69.36 | 0.39 | 8.85 | -- | 1.64 | -- | -- | -- | -0.38 | 21.9 | -- | -- | -- | -- |
| 140.08 | 0.551 | 8.86 | -- | -- | -1.79 | -- | -- | -0.617 | -- | 81.45 | 771 | -- | -- |
| 229.89 | 0.708 | 8.8 | -- | -- | -- | -- | -- | -0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.22 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 16 |
| 23 | 56.45 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 16 |
| 39 | 56.56 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 58 | 56.68 | humidity | 90.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 65 | 56.70 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 89 | 56.79 | humidity | 90.0 | 720 | > th | dose dependent | no | NA | NA |
| 102 | 56.84 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 107 | 56.87 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 114 | 56.89 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 208 | 57.29 | humidity | 90.0 | 720 | > th | dose independent | sin | 9 | NA |
| 218 | 57.33 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 16 | 4 |
| 317 | 57.74 | humidity | 90.0 | 720 | > th | dose independent | rect. | 4 | 22 |
| 321 | 57.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 369 | 57.95 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 14 | 6 |
| 375 | 57.97 | humidity | 90.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 388 | 58.03 | humidity | 90.0 | 720 | > th | dose independent | no | NA | NA |
| 436 | 58.13 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 1 | 2 |
| 439 | 58.13 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 450 | 58.15 | humidity | 80.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 454 | 58.17 | humidity | 90.0 | 720 | > th | dose independent | rect. | 9 | 23 |
| 481 | 58.25 | humidity | 90.0 | 720 | > th | dose independent | rect. | 23 | 3 |
| 483 | 58.25 | humidity | 70.0 | 30 | > th | dose independent | rect. | 14 | 6 |
| 488 | 58.26 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 508 | 58.31 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 514 | 58.33 | wind | 9.0 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 524 | 58.34 | humidity | 90.0 | 720 | < th | dose independent | rect. | 21 | 14 |
| 537 | 58.36 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 538 | 58.36 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 543 | 58.37 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 550 | 58.39 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 551 | 58.39 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 564 | 58.42 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 565 | 58.43 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 576 | 58.44 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 580 | 58.45 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 582 | 58.46 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 591 | 58.47 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 604 | 58.50 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 609 | 58.51 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 619 | 58.52 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 16 | 3 |
| 644 | 58.55 | wind | 9.0 | 43200 | > th | dose independent | rect. | 12 | 19 |
| 666 | 58.57 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 680 | 58.59 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 688 | 58.59 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 19 |
| 690 | 58.59 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 694 | 58.60 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 708 | 58.61 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 719 | 58.62 | wind | 9.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 732 | 58.63 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 749 | 58.65 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 755 | 58.65 | wind | 9.0 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 786 | 58.67 | wind | 9.0 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 796 | 58.67 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 797 | 58.68 | wind | 9.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 826 | 58.69 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 827 | 58.69 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 875 | 58.72 | wind | 1.0 | 720 | > th | dose independent | rect. | 9 | 7 |
| 884 | 58.72 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 901 | 58.72 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 919 | 58.73 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 972 | 58.75 | wind | 7.0 | 10 | > th | dose dependent | rect. | 11 | 2 |
| 974 | 58.75 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 11 | 20 |