Os06g0480500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0480500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.78 | 0.605 | 5.2 | 0.105 | 1.6 | -0.827 | 0.0813 | -2.75 | 0.246 | 4.89 | 83 | 6543 | -- | -- |
| 174.12 | 0.615 | 5.21 | 0.25 | 1.63 | -0.879 | 0.166 | -- | 0.305 | 4.96 | 83.2 | 5739 | -- | -- |
| 165.8 | 0.6 | 5.2 | 0.104 | 1.6 | -0.824 | -- | -2.75 | 0.244 | 4.89 | 83 | 6537 | -- | -- |
| 173.76 | 0.614 | 5.21 | 0.255 | 1.57 | -1.02 | -- | -- | 0.29 | 4.8 | 83 | 5148 | -- | -- |
| 275.88 | 0.778 | 5.26 | 0.336 | -- | -1.32 | -- | -0.395 | 0.173 | -- | 88 | 4843 | -- | -- |
| 186.68 | 0.641 | 5.24 | 0.266 | 1.63 | -- | 0.122 | -- | 0.165 | 5.05 | -- | -- | -- | -- |
| 186.71 | 0.64 | 5.24 | 0.266 | 1.63 | -- | -- | -- | 0.165 | 5.04 | -- | -- | -- | -- |
| 276.17 | 0.777 | 5.26 | 0.34 | -- | -1.33 | -- | -- | 0.173 | -- | 88 | 4843 | -- | -- |
| 175.49 | 0.617 | 5.21 | -- | 1.58 | -1.04 | -- | -- | 0.281 | 4.79 | 83.89 | 5169 | -- | -- |
| 325.6 | 0.843 | 5.25 | 0.324 | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
| 188.57 | 0.642 | 5.24 | -- | 1.63 | -- | -- | -- | 0.135 | 5.04 | -- | -- | -- | -- |
| 275.74 | 0.776 | 5.26 | -- | -- | -1.36 | -- | -- | 0.158 | -- | 91 | 4824 | -- | -- |
| 328.37 | 0.846 | 5.26 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.64 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 6 | 157.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 10 | 158.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 11 | 158.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 12 | 158.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 31 | 159.73 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 38 | 159.86 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 51 | 160.07 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 55 | 160.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 57 | 160.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 58 | 160.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 9 |
| 101 | 160.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 117 | 160.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 129 | 161.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 130 | 161.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 137 | 161.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 7 |
| 143 | 161.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 149 | 161.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 10 |
| 166 | 161.33 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 222 | 161.74 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 251 | 162.05 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 271 | 162.25 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 0 | NA |
| 275 | 162.29 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 279 | 162.33 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 286 | 162.41 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 287 | 162.41 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 290 | 162.44 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 333 | 162.87 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 342 | 162.93 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 343 | 162.93 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 352 | 163.01 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 356 | 163.08 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 359 | 163.09 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 364 | 163.13 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 369 | 163.16 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 375 | 163.22 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 384 | 163.25 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 387 | 163.26 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 12 |
| 401 | 163.27 | humidity | 60.0 | 14400 | < th | dose dependent | no | NA | NA |
| 472 | 163.28 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 473 | 163.29 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 521 | 163.39 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 542 | 163.45 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 637 | 163.62 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 646 | 163.66 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 686 | 163.78 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 688 | 163.78 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 704 | 163.79 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 713 | 163.83 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 716 | 163.84 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 2 |
| 727 | 163.88 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 732 | 163.89 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 733 | 163.89 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 779 | 163.98 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 831 | 164.11 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 834 | 164.11 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 835 | 164.11 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 846 | 164.15 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 854 | 164.20 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 858 | 164.23 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 864 | 164.27 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 890 | 164.34 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 940 | 164.50 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 975 | 164.65 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 977 | 164.65 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 984 | 164.69 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 19 | 14 |