Os06g0480000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os06g0480000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.72 | 0.214 | 10.9 | 0.807 | 0.657 | -0.252 | -0.387 | 3.96 | 0.021 | 12.3 | 26.8 | 4575 | -- | -- |
| 22.9 | 0.223 | 11 | -0.188 | 0.658 | 0.191 | -0.671 | -- | -0.186 | 11.8 | 31.93 | 37244 | -- | -- |
| 21.37 | 0.215 | 10.9 | 0.794 | 0.658 | -0.255 | -- | 4.01 | 0.0167 | 12.3 | 26.94 | 4577 | -- | -- |
| 22.25 | 0.22 | 11 | -0.304 | 0.647 | 0.327 | -- | -- | -0.233 | 12 | 31.92 | 36751 | -- | -- |
| 41.82 | 0.303 | 11 | -0.127 | -- | 0.627 | -- | 0.208 | -0.174 | -- | 25.4 | 3378 | -- | -- |
| 24.87 | 0.234 | 11 | -0.0284 | 0.641 | -- | -0.393 | -- | -0.134 | 12.2 | -- | -- | -- | -- |
| 25.54 | 0.237 | 11 | -0.0438 | 0.642 | -- | -- | -- | -0.136 | 12.2 | -- | -- | -- | -- |
| 41.83 | 0.303 | 11 | -0.149 | -- | 0.642 | -- | -- | -0.18 | -- | 25.4 | 3378 | -- | -- |
| 23.42 | 0.225 | 11 | -- | 0.648 | 0.219 | -- | -- | -0.216 | 12.2 | 31.61 | 35712 | -- | -- |
| 51.49 | 0.335 | 11 | -0.0648 | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
| 25.59 | 0.237 | 11 | -- | 0.643 | -- | -- | -- | -0.131 | 12.2 | -- | -- | -- | -- |
| 42.41 | 0.304 | 11 | -- | -- | 0.621 | -- | -- | -0.162 | -- | 25.4 | 3378 | -- | -- |
| 51.6 | 0.335 | 11 | -- | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.47 | radiation | 10 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 3 | 19.71 | radiation | 10 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 14 | 19.92 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 15 | 19.92 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 16 | 19.93 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 57 | 20.06 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 58 | 20.06 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 74 | 20.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 77 | 20.12 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 83 | 20.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 9 |
| 115 | 20.20 | radiation | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 123 | 20.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 135 | 20.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 142 | 20.26 | radiation | 20 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 143 | 20.26 | radiation | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 164 | 20.29 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 167 | 20.30 | radiation | 10 | 14400 | < th | dose independent | sin | 9 | NA |
| 168 | 20.30 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 177 | 20.30 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 185 | 20.31 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 187 | 20.31 | radiation | 20 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 189 | 20.31 | radiation | 40 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 194 | 20.32 | radiation | 20 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 213 | 20.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 215 | 20.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 226 | 20.34 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 243 | 20.34 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 244 | 20.34 | radiation | 40 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 342 | 20.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 387 | 20.41 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 389 | 20.41 | radiation | 40 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 400 | 20.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 435 | 20.47 | wind | 3 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 469 | 20.49 | wind | 1 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 488 | 20.50 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 576 | 20.52 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 595 | 20.53 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 597 | 20.53 | wind | 9 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 615 | 20.54 | wind | 3 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 617 | 20.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 663 | 20.55 | radiation | 40 | 14400 | > th | dose dependent | sin | 7 | NA |
| 664 | 20.55 | radiation | 40 | 14400 | > th | dose dependent | sin | 5 | NA |
| 735 | 20.56 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 737 | 20.56 | radiation | 40 | 14400 | > th | dose dependent | sin | 3 | NA |
| 743 | 20.56 | wind | 5 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 756 | 20.56 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 7 |
| 829 | 20.58 | radiation | 40 | 14400 | < th | dose independent | sin | 10 | NA |
| 840 | 20.58 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 843 | 20.58 | radiation | 40 | 14400 | > th | dose dependent | sin | 0 | NA |
| 859 | 20.59 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 930 | 20.60 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 932 | 20.60 | radiation | 40 | 14400 | > th | dose dependent | no | NA | NA |