Os06g0479300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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Os06g0479300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.07 | 0.461 | 7.21 | -0.481 | 0.0287 | -0.702 | 0.908 | 0.108 | 0.119 | 19.6 | 86 | 712 | -- | -- |
| 96.02 | 0.456 | 7.22 | -0.498 | 0.0541 | -0.696 | 0.939 | -- | 0.114 | 19.6 | 85.77 | 670 | -- | -- |
| 97.66 | 0.46 | 7.21 | -0.467 | 0.0502 | -0.702 | -- | 0.547 | 0.127 | 20 | 85.91 | 664 | -- | -- |
| 98.53 | 0.462 | 7.21 | -0.521 | 0.0579 | -0.7 | -- | -- | 0.118 | 20.1 | 85.78 | 655 | -- | -- |
| 97.76 | 0.46 | 7.22 | -0.462 | -- | -0.663 | -- | 0.557 | 0.12 | -- | 85.79 | 669 | -- | -- |
| 108.74 | 0.489 | 7.22 | -0.436 | 0.359 | -- | -0.899 | -- | 0.0194 | 8.23 | -- | -- | -- | -- |
| 111.22 | 0.494 | 7.22 | -0.462 | 0.36 | -- | -- | -- | 0.0201 | 8.33 | -- | -- | -- | -- |
| 98.64 | 0.463 | 7.21 | -0.518 | -- | -0.659 | -- | -- | 0.111 | -- | 85.75 | 656 | -- | -- |
| 105.54 | 0.478 | 7.2 | -- | 0.0509 | -0.694 | -- | -- | 0.175 | 0.00705 | 85.41 | 720 | -- | -- |
| 118.39 | 0.508 | 7.23 | -0.46 | -- | -- | -- | -- | 0.0239 | -- | -- | -- | -- | -- |
| 116.84 | 0.506 | 7.21 | -- | 0.357 | -- | -- | -- | 0.0715 | 8.43 | -- | -- | -- | -- |
| 105.63 | 0.479 | 7.2 | -- | -- | -0.662 | -- | -- | 0.167 | -- | 85 | 705 | -- | -- |
| 123.96 | 0.52 | 7.22 | -- | -- | -- | -- | -- | 0.0749 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 17 | 92.94 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 5 |
| 18 | 92.94 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 11 |
| 21 | 92.97 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 2 |
| 48 | 93.54 | temperature | 25 | 270 | < th | dose independent | sin | 13 | NA |
| 54 | 93.65 | temperature | 25 | 270 | > th | dose independent | sin | 12 | NA |
| 55 | 93.65 | temperature | 25 | 720 | > th | dose independent | sin | 14 | NA |
| 59 | 93.69 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 10 |
| 100 | 94.26 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 15 |
| 103 | 94.29 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 11 |
| 106 | 94.33 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 13 |
| 139 | 94.64 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 229 | 95.35 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 9 |
| 251 | 95.57 | temperature | 25 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 286 | 95.79 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 332 | 96.10 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 9 |
| 350 | 96.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 403 | 96.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 439 | 96.65 | humidity | 80 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 457 | 96.75 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 1 |
| 486 | 96.88 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 515 | 97.01 | radiation | 1 | 720 | > th | dose independent | sin | 19 | NA |
| 518 | 97.01 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 522 | 97.03 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 11 |
| 524 | 97.03 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 13 |
| 541 | 97.11 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 8 |
| 564 | 97.19 | humidity | 80 | 720 | > th | dose dependent | sin | 20 | NA |
| 569 | 97.21 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 571 | 97.22 | humidity | 50 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 572 | 97.22 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 591 | 97.26 | humidity | 50 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 592 | 97.27 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 8 |
| 619 | 97.38 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 9 |
| 623 | 97.38 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 628 | 97.41 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 5 |
| 633 | 97.41 | humidity | 80 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 665 | 97.47 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 671 | 97.49 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 678 | 97.52 | temperature | 20 | 90 | > th | dose dependent | sin | 11 | NA |
| 697 | 97.56 | humidity | 50 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 702 | 97.57 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 703 | 97.57 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 708 | 97.58 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 718 | 97.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 720 | 97.62 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 9 |
| 722 | 97.62 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 728 | 97.63 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 738 | 97.65 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 743 | 97.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 796 | 97.82 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 797 | 97.82 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 811 | 97.85 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 21 |
| 818 | 97.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 829 | 97.88 | humidity | 90 | 720 | < th | dose independent | rect. | 7 | 19 |
| 852 | 97.92 | humidity | 90 | 720 | > th | dose independent | rect. | 17 | 7 |
| 856 | 97.92 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 883 | 97.96 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 884 | 97.96 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 895 | 97.97 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 911 | 98.00 | humidity | 90 | 720 | < th | dose independent | rect. | 15 | 11 |
| 913 | 98.00 | humidity | 70 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 917 | 98.00 | humidity | 90 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 937 | 98.02 | humidity | 90 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 939 | 98.03 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 943 | 98.03 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 947 | 98.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 977 | 98.07 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 4 |
| 981 | 98.07 | humidity | 90 | 720 | < th | dose dependent | rect. | 22 | 23 |