Os06g0479200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0479200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.76 | 0.161 | 13 | -0.00661 | 0.354 | 0.328 | 0.238 | -0.153 | -0.0452 | 21.9 | 0.3233 | 14 | -- | -- |
| 11.83 | 0.161 | 13 | -0.0204 | 0.361 | 0.316 | 0.0627 | -- | -0.0415 | 22.1 | 0.3233 | 14 | -- | -- |
| 11.82 | 0.161 | 13 | -0.023 | 0.358 | 0.319 | -- | -0.00128 | -0.0425 | 22 | 0.3677 | 16 | -- | -- |
| 11.81 | 0.16 | 13 | -0.0213 | 0.363 | 0.322 | -- | -- | -0.0459 | 21.9 | 0.337 | 13 | -- | -- |
| 14.2 | 0.176 | 13 | -0.0099 | -- | 0.539 | -- | -0.0321 | -0.0409 | -- | 0.5736 | 23 | -- | -- |
| 14.18 | 0.177 | 13 | -0.0448 | 0.717 | -- | 0.0745 | -- | -0.0521 | 22.8 | -- | -- | -- | -- |
| 14.2 | 0.176 | 13 | -0.0478 | 0.716 | -- | -- | -- | -0.0523 | 22.8 | -- | -- | -- | -- |
| 14.21 | 0.176 | 13 | -0.0105 | -- | 0.539 | -- | -- | -0.0412 | -- | 0.5736 | 23 | -- | -- |
| 11.81 | 0.16 | 13 | -- | 0.364 | 0.321 | -- | -- | -0.0463 | 21.8 | 0.38 | 16 | -- | -- |
| 45.97 | 0.317 | 13 | -0.0332 | -- | -- | -- | -- | -0.0479 | -- | -- | -- | -- | -- |
| 14.26 | 0.177 | 13 | -- | 0.716 | -- | -- | -- | -0.047 | 22.8 | -- | -- | -- | -- |
| 14.21 | 0.176 | 13 | -- | -- | 0.539 | -- | -- | -0.04 | -- | 0.5736 | 23 | -- | -- |
| 45.99 | 0.317 | 13 | -- | -- | -- | -- | -- | -0.0442 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.16 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 14 |
| 3 | 11.25 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 27 | 11.40 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 28 | 11.41 | radiation | 1.0 | 30 | > th | dose independent | sin | 12 | NA |
| 30 | 11.42 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 32 | 11.44 | wind | 5.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 33 | 11.45 | radiation | 1.0 | 30 | < th | dose dependent | sin | 12 | NA |
| 36 | 11.47 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 38 | 11.48 | wind | 3.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 58 | 11.51 | radiation | 1.0 | 30 | < th | dose independent | sin | 12 | NA |
| 61 | 11.52 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 66 | 11.54 | wind | 3.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 78 | 11.57 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 96 | 11.59 | humidity | 50.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 97 | 11.59 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 108 | 11.60 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 109 | 11.60 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 113 | 11.60 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 118 | 11.61 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 120 | 11.61 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 121 | 11.61 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 125 | 11.61 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 128 | 11.61 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 136 | 11.63 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 170 | 11.64 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 173 | 11.65 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 2 |
| 175 | 11.65 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 21 |
| 177 | 11.65 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 2 |
| 183 | 11.67 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 185 | 11.67 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 186 | 11.67 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 190 | 11.67 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 191 | 11.67 | radiation | 20.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 195 | 11.67 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 197 | 11.67 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 202 | 11.69 | wind | 9.0 | 10 | < th | dose independent | rect. | 7 | 22 |
| 222 | 11.70 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 22 |
| 241 | 11.74 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 242 | 11.74 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 247 | 11.75 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 252 | 11.75 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 304 | 11.81 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 309 | 11.83 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 22 |
| 310 | 11.83 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 312 | 11.83 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 22 |
| 333 | 11.85 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 336 | 11.86 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 346 | 11.88 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 348 | 11.88 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 351 | 11.89 | radiation | 1.0 | 10 | < th | dose dependent | no | NA | NA |
| 363 | 11.89 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 364 | 11.89 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 371 | 11.90 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 410 | 11.91 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 441 | 11.95 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 445 | 11.95 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 446 | 11.95 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 496 | 11.99 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 504 | 12.01 | humidity | 80.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 527 | 12.03 | radiation | 1.0 | 90 | < th | dose independent | rect. | 12 | 16 |
| 540 | 12.04 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 590 | 12.11 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 604 | 12.13 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 631 | 12.15 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 727 | 12.23 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 737 | 12.23 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 772 | 12.25 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 779 | 12.26 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 16 |
| 785 | 12.26 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 795 | 12.27 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 807 | 12.28 | radiation | 1.0 | 30 | > th | dose independent | no | NA | NA |
| 808 | 12.28 | radiation | 1.0 | 30 | < th | dose independent | no | NA | NA |
| 826 | 12.28 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 897 | 12.28 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 898 | 12.28 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 903 | 12.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 919 | 12.29 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 941 | 12.30 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 945 | 12.31 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 946 | 12.31 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 949 | 12.31 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 953 | 12.31 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 958 | 12.31 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 959 | 12.31 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 963 | 12.31 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 966 | 12.31 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 972 | 12.31 | radiation | 1.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 976 | 12.31 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 983 | 12.32 | humidity | 90.0 | 30 | < th | dose independent | rect. | 5 | 2 |