FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0478600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.74 (0.0545) R2 : 0.516
β1 : -3.06 (0.201) R2dD : 0.261 R2D : 0.195
β2 : 2.03 (0.132) R2dC : 0.256 R2C : 0.209
β3 : -1.63 (0.169) R2dE : 0.106 R2E : 0.0014
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.481 (0.118) R2dN8 : 0.0245 R2N8 : -0.0241
σ : 1.01
deviance : 474.21
__
_____
C
peak time of C : 10.1
E
wheather : humidity
threshold : 72.91
memory length : 1294
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
465.44 1.01 4.74 -3.06 2.02 -1.63 -1.5 0.383 -0.491 10.2 73 1294 -- --
465.75 1.01 4.74 -3 2.02 -1.61 -1.46 -- -0.473 10.2 72.96 1294 -- --
474.25 1.01 4.73 -3.08 2.03 -1.65 -- 0.193 -0.477 10.1 73 1294 -- --
474.21 1.01 4.74 -3.06 2.03 -1.63 -- -- -0.481 10.1 72.91 1294 -- --
688.47 1.22 4.8 -3.15 -- -1.59 -- 0.677 -0.487 -- 72.27 1467 -- --
557.17 1.11 4.69 -2.68 1.87 -- -1.69 -- -0.258 9.75 -- -- -- --
567.89 1.12 4.69 -2.74 1.88 -- -- -- -0.262 9.66 -- -- -- --
689.48 1.22 4.79 -3.05 -- -1.56 -- -- -0.458 -- 72.77 1467 -- --
702.47 1.23 4.69 -- 1.87 -1.95 -- -- -0.202 9.76 88 1487 -- --
778.47 1.3 4.74 -2.76 -- -- -- -- -0.259 -- -- -- -- --
766.35 1.29 4.62 -- 1.89 -- -- -- 0.0433 9.77 -- -- -- --
907.23 1.4 4.73 -- -- -2.05 -- -- -0.226 -- 88.24 1501 -- --
979.44 1.46 4.67 -- -- -- -- -- 0.0472 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 466.84 humidity 70 14400 < th dose independent rect. 19 13
2 470.18 humidity 70 14400 > th dose independent rect. 19 13
3 470.28 temperature 20 270 > th dose dependent rect. 3 5
4 470.52 humidity 70 14400 < th dose dependent rect. 18 1
5 471.61 humidity 70 14400 < th dose independent rect. 18 4
28 472.27 humidity 70 14400 < th dose dependent rect. 18 14
30 472.35 humidity 70 14400 > th dose independent rect. 19 10
31 472.36 humidity 70 14400 > th dose independent rect. 19 5
32 472.38 humidity 70 14400 > th dose independent rect. 19 3
46 473.78 humidity 70 14400 < th dose dependent rect. 18 4
56 474.06 humidity 60 14400 < th dose dependent rect. 16 3
69 474.48 humidity 60 14400 < th dose dependent rect. 16 16
131 479.21 humidity 50 14400 < th dose independent rect. 16 19
132 479.51 humidity 70 1440 > th dose independent sin 12 NA
152 480.64 temperature 25 1440 > th dose dependent rect. 15 1
156 481.14 humidity 70 1440 < th dose independent sin 13 NA
157 481.17 humidity 50 14400 > th dose independent rect. 16 18
162 481.61 temperature 25 720 > th dose dependent rect. 19 13
164 481.66 humidity 70 1440 < th dose independent rect. 15 16
165 481.68 humidity 70 1440 < th dose independent rect. 15 5
189 482.03 humidity 70 1440 > th dose independent rect. 15 16
193 482.07 humidity 70 1440 > th dose independent rect. 15 14
195 482.11 humidity 70 1440 > th dose independent rect. 15 5
196 482.12 humidity 70 1440 > th dose independent rect. 15 7
198 482.12 temperature 25 1440 > th dose dependent rect. 13 3
212 482.62 humidity 70 1440 > th dose independent rect. 15 19
217 482.76 temperature 25 1440 > th dose dependent rect. 13 1
257 483.81 humidity 70 1440 > th dose independent rect. 15 22
261 483.94 humidity 70 1440 > th dose independent rect. 18 13
264 483.97 humidity 70 1440 > th dose independent rect. 18 11
286 484.06 humidity 70 1440 > th dose independent rect. 18 2
288 484.08 humidity 70 1440 > th dose independent rect. 18 4
303 484.15 humidity 70 1440 > th dose independent rect. 18 6
317 484.28 humidity 60 1440 > th dose dependent rect. 11 2
331 484.48 humidity 70 1440 > th dose independent rect. 11 23
352 484.87 humidity 50 1440 > th dose dependent rect. 9 12
366 485.01 humidity 50 1440 > th dose dependent rect. 6 15
369 485.04 temperature 25 1440 > th dose dependent rect. 12 19
462 485.63 humidity 70 1440 > th dose independent rect. 11 18
463 485.63 humidity 70 1440 > th dose independent rect. 11 20
468 485.65 humidity 70 1440 > th dose independent rect. 11 9
474 485.66 humidity 70 1440 > th dose independent rect. 11 11
477 485.67 humidity 70 1440 > th dose independent rect. 9 20
488 485.70 humidity 70 1440 > th dose independent rect. 9 11
489 485.70 humidity 70 1440 > th dose independent rect. 9 13
494 485.72 humidity 70 1440 > th dose independent rect. 9 15
500 485.73 humidity 50 1440 > th dose dependent sin 21 NA
528 485.85 humidity 80 1440 < th dose dependent rect. 11 10
579 486.06 humidity 90 1440 < th dose dependent rect. 7 14
580 486.08 humidity 70 1440 > th dose independent rect. 2 18
581 486.09 humidity 70 1440 > th dose independent rect. 2 20
593 486.10 humidity 70 1440 > th dose independent rect. 23 23
604 486.11 humidity 70 1440 > th dose independent rect. 21 23
613 486.13 humidity 70 1440 > th dose independent no NA NA
637 486.15 humidity 90 1440 < th dose dependent rect. 9 12
718 486.43 humidity 80 1440 < th dose dependent rect. 15 6
754 486.68 temperature 25 1440 > th dose dependent sin 18 NA
803 486.91 humidity 80 1440 < th dose dependent rect. 13 8
865 487.17 humidity 80 1440 < th dose dependent sin 19 NA
904 487.28 humidity 80 1440 < th dose dependent rect. 19 1
929 487.39 humidity 50 1440 > th dose dependent rect. 15 6
933 487.40 temperature 25 1440 > th dose dependent rect. 23 18
969 487.52 humidity 80 1440 < th dose dependent rect. 18 3