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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0478200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0264) R2 : 0.0041
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0761 (0.0556) R2dN8 : 0.00529 R2N8 : 0.0041
σ : 0.497
deviance : 113.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.8 0.479 2.84 -0.197 0.418 0.384 -1.51 -1.83 0.0973 13.3 34.67 312 -- --
106.43 0.48 2.85 -0.263 0.363 0.381 -0.381 -- 0.0834 13.8 115.1 435 -- --
106.43 0.48 2.85 -0.234 0.351 0.488 -- -0.66 0.0986 15.7 21.61 725 -- --
106.91 0.482 2.85 -0.273 0.533 0.61 -- -- 0.0778 15.8 11.66 645 -- --
106.31 0.48 2.85 -0.209 -- 0.273 -- -1.07 0.104 -- 20 1215 -- --
108.14 0.488 2.85 -0.272 0.191 -- -0.413 -- 0.0467 11.1 -- -- -- --
108.87 0.489 2.85 -0.289 0.193 -- -- -- 0.0451 11.1 -- -- -- --
107.84 0.484 2.85 -0.283 -- 0.372 -- -- 0.0866 -- 8.838 1196 -- --
108.72 0.486 2.84 -- 0.534 0.64 -- -- 0.127 15.8 15.93 635 -- --
111.2 0.493 2.86 -0.293 -- -- -- -- 0.0436 -- -- -- -- --
111.07 0.493 2.85 -- 0.196 -- -- -- 0.0773 11.2 -- -- -- --
109.85 0.488 2.84 -- -- 0.374 -- -- 0.131 -- 14.47 1191 -- --
113.47 0.497 2.85 -- -- -- -- -- 0.0761 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.51 temperature 30 10 > th dose independent rect. 14 1
5 95.54 wind 1 90 < th dose dependent rect. 13 1
13 97.26 wind 1 90 < th dose independent rect. 13 1
22 99.61 radiation 10 720 > th dose independent rect. 7 4
52 99.83 radiation 20 270 < th dose independent rect. 11 2
53 99.91 radiation 20 720 < th dose dependent rect. 2 9
63 100.38 radiation 10 720 < th dose dependent rect. 9 1
67 100.47 radiation 20 270 < th dose dependent rect. 19 19
69 100.56 radiation 40 270 < th dose dependent rect. 11 2
72 100.69 radiation 40 270 < th dose dependent rect. 9 5
109 101.06 radiation 10 720 > th dose independent sin 9 NA
114 101.07 radiation 20 720 < th dose dependent rect. 19 16
134 101.23 radiation 1 720 > th dose dependent rect. 6 5
150 101.24 radiation 1 720 > th dose dependent rect. 18 17
190 101.47 radiation 10 720 < th dose independent rect. 9 1
208 101.58 radiation 20 720 < th dose dependent sin 8 NA
239 101.72 humidity 80 720 < th dose independent rect. 8 3
304 101.97 humidity 80 720 < th dose independent rect. 22 13
316 102.01 temperature 20 10 > th dose independent rect. 13 1
334 102.07 radiation 20 270 < th dose independent rect. 19 19
335 102.07 radiation 1 720 > th dose dependent sin 10 NA
343 102.08 humidity 80 720 < th dose independent rect. 5 6
349 102.09 radiation 20 720 < th dose independent rect. 2 10
412 102.27 radiation 20 10 > th dose independent rect. 13 1
455 102.35 wind 7 30 < th dose independent rect. 14 22
458 102.36 temperature 20 10 > th dose dependent rect. 13 1
462 102.37 radiation 30 10 < th dose dependent rect. 11 4
517 102.45 humidity 80 720 > th dose independent rect. 2 9
527 102.47 wind 1 720 < th dose dependent rect. 8 1
548 102.54 humidity 60 10 > th dose independent rect. 13 1
557 102.55 wind 5 10 > th dose independent rect. 12 2
594 102.59 wind 1 10 > th dose dependent rect. 12 2
688 102.76 radiation 20 10 > th dose independent rect. 14 22
744 102.88 radiation 40 10 < th dose dependent rect. 22 16
760 102.92 radiation 10 720 < th dose dependent rect. 2 21
773 102.94 radiation 1 10 > th dose dependent rect. 14 22
798 102.99 humidity 50 90 > th dose dependent rect. 21 17
834 103.06 wind 9 270 > th dose dependent rect. 11 3
895 103.15 humidity 90 10 < th dose independent rect. 13 1
934 103.19 radiation 30 270 < th dose independent rect. 9 20
941 103.21 wind 9 270 > th dose independent rect. 11 3
965 103.22 radiation 20 720 < th dose independent sin 9 NA