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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0477600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0221) R2 : 0.568
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.21 (0.0971) R2dE : 0.541 R2E : 0.564
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0822 (0.0483) R2dN8 : 0.00391 R2N8 : 0.0277
σ : 0.41
deviance : 77.68
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C
peak time of C : --
E
wheather : temperature
threshold : 30.73
memory length : 651
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.03 0.41 11 -0.258 0.14 -2.36 0.15 0.52 0.0328 11.1 31.34 713 -- --
76.23 0.407 10.9 -0.175 0.145 -2.37 0.227 -- 0.0461 10.8 30.96 711 -- --
76.11 0.406 11 -0.271 0.138 -2.36 -- 0.636 0.0282 11.3 31.33 713 -- --
76.44 0.407 11 -0.158 0.143 -2.35 -- -- 0.045 11.5 30.78 716 -- --
77.14 0.409 11 -0.269 -- -2.33 -- 0.832 0.0518 -- 31.98 693 -- --
149.03 0.572 10.9 0.464 0.455 -- -0.0924 -- 0.475 19.9 -- -- -- --
149.06 0.572 10.9 0.467 0.455 -- -- -- 0.475 19.9 -- -- -- --
77.32 0.41 10.9 -0.126 -- -2.25 -- -- 0.0593 -- 30.67 668 -- --
77.02 0.409 10.9 -- 0.124 -2.3 -- -- 0.0762 11.3 30.89 707 -- --
160.28 0.592 10.9 0.462 -- -- -- -- 0.469 -- -- -- -- --
154.8 0.582 10.9 -- 0.451 -- -- -- 0.423 19.9 -- -- -- --
77.68 0.41 10.9 -- -- -2.21 -- -- 0.0822 -- 30.73 651 -- --
165.9 0.601 10.9 -- -- -- -- -- 0.418 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.07 temperature 30 720 < th dose dependent rect. 24 21
5 74.04 temperature 15 720 > th dose dependent rect. 21 20
9 74.23 temperature 10 720 > th dose dependent rect. 12 23
16 74.44 temperature 30 720 < th dose dependent rect. 17 21
49 75.17 temperature 30 720 < th dose dependent rect. 19 20
53 75.19 temperature 30 720 < th dose dependent rect. 20 22
116 76.00 temperature 10 720 > th dose dependent rect. 1 23
131 76.20 temperature 10 720 > th dose dependent rect. 3 23
134 76.29 temperature 30 720 < th dose dependent no NA NA
137 76.35 temperature 15 720 > th dose dependent no NA NA
154 76.74 temperature 30 270 < th dose dependent rect. 7 23
256 78.26 temperature 15 1440 > th dose dependent rect. 17 17
259 78.27 temperature 15 720 > th dose dependent sin 4 NA
282 78.44 temperature 15 720 > th dose dependent rect. 7 23
288 78.47 temperature 30 1440 < th dose dependent rect. 3 6
294 78.54 temperature 15 1440 > th dose dependent rect. 3 6
297 78.56 temperature 15 1440 > th dose dependent rect. 2 8
298 78.56 temperature 30 1440 < th dose dependent rect. 2 8
329 78.70 temperature 15 1440 > th dose dependent sin 9 NA
364 78.85 temperature 30 1440 < th dose dependent sin 9 NA
400 78.94 temperature 15 1440 > th dose dependent rect. 23 11
432 79.04 temperature 25 1440 < th dose dependent rect. 4 1
440 79.06 temperature 30 1440 < th dose dependent rect. 23 11
614 79.54 temperature 30 720 < th dose dependent sin 3 NA
897 80.19 temperature 20 1440 > th dose dependent rect. 19 2