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Os06g0477400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.041) R2 : 0.48
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.15 (0.103) R2dC : 0.141 R2C : 0.0694
β3 : -2.02 (0.157) R2dE : 0.204 R2E : -0.0132
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.29 (0.0892) R2dN8 : 0.337 R2N8 : 0.141
σ : 0.764
deviance : 269
__
_____
C
peak time of C : 15.8
E
wheather : precipitation
threshold : -0.09116
memory length : 5886
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
259.42 0.757 10.2 -0.0892 1.12 -1.51 0.0352 -2.99 -1.27 15.8 -0.01863 6732 -- --
268.95 0.764 10.2 -0.1 1.12 -1.93 -0.248 -- -1.26 15.6 -0.2215 5888 -- --
259.42 0.75 10.2 -0.0879 1.12 -1.51 -- -2.99 -1.27 15.8 -0.01759 6734 -- --
268.66 0.763 10.2 -0.121 1.15 -1.96 -- -- -1.27 15.8 -0.1422 5888 -- --
328.24 0.844 10.2 -0.11 -- -1.47 -- -3.25 -1.29 -- -0.04215 6728 -- --
356.4 0.885 10.1 -0.6 1.12 -- 0.379 -- -1.04 15.9 -- -- -- --
356.79 0.885 10.1 -0.594 1.12 -- -- -- -1.04 15.8 -- -- -- --
339.19 0.858 10.2 -0.0641 -- -1.87 -- -- -1.27 -- 0.294 6289 -- --
269 0.764 10.2 -- 1.15 -2.02 -- -- -1.29 15.8 -0.09116 5886 -- --
426.31 0.965 10.1 -0.641 -- -- -- -- -1.07 -- -- -- -- --
366.1 0.895 10.1 -- 1.14 -- -- -- -0.971 15.8 -- -- -- --
339.35 0.858 10.2 -- -- -1.91 -- -- -1.29 -- 0.3054 6364 -- --
437.14 0.976 10.1 -- -- -- -- -- -0.996 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 254.98 precipitation 0.1 43200 > th dose dependent rect. 19 2
2 256.83 wind 1.0 43200 < th dose independent rect. 1 1
3 257.96 wind 1.0 43200 > th dose independent rect. 1 1
4 258.24 precipitation 0.1 43200 > th dose dependent rect. 17 3
5 258.41 wind 1.0 43200 > th dose dependent rect. 6 1
6 258.99 wind 9.0 43200 < th dose dependent rect. 6 1
7 258.99 humidity 70.0 14400 > th dose dependent rect. 17 2
11 259.80 humidity 80.0 14400 > th dose independent rect. 17 1
12 259.95 temperature 20.0 14400 < th dose independent rect. 20 1
14 260.06 temperature 25.0 720 > th dose dependent sin 7 NA
15 260.24 wind 3.0 43200 > th dose independent rect. 6 2
19 260.52 wind 1.0 43200 < th dose dependent rect. 24 4
20 260.61 precipitation 0.1 14400 > th dose dependent rect. 1 19
22 260.66 wind 3.0 43200 < th dose independent rect. 6 3
26 261.06 precipitation 0.1 4320 > th dose dependent sin 3 NA
31 261.29 humidity 80.0 43200 < th dose independent rect. 2 5
32 261.30 wind 3.0 43200 < th dose independent rect. 4 6
36 261.32 wind 3.0 43200 > th dose independent rect. 5 5
49 261.55 humidity 80.0 43200 < th dose independent rect. 22 9
54 261.64 humidity 80.0 43200 > th dose independent rect. 1 6
56 261.66 temperature 25.0 720 > th dose dependent rect. 20 17
62 261.82 humidity 80.0 14400 < th dose independent rect. 17 1
76 262.15 precipitation 0.1 14400 < th dose independent rect. 13 13
77 262.15 precipitation 0.1 14400 < th dose dependent rect. 13 13
79 262.19 precipitation 0.1 14400 > th dose independent rect. 13 13
82 262.23 precipitation 0.1 14400 < th dose independent rect. 13 8
83 262.23 precipitation 0.1 14400 < th dose dependent rect. 13 8
87 262.28 precipitation 0.1 14400 > th dose independent rect. 13 8
93 262.37 temperature 25.0 720 > th dose dependent rect. 20 19
94 262.42 precipitation 0.1 4320 > th dose independent rect. 1 18
97 262.43 precipitation 0.1 14400 > th dose dependent rect. 13 19
98 262.45 precipitation 0.1 14400 < th dose independent sin 17 NA
99 262.45 precipitation 0.1 14400 < th dose dependent sin 17 NA
105 262.48 humidity 80.0 43200 > th dose independent rect. 2 2
106 262.48 precipitation 0.1 4320 > th dose independent rect. 23 20
113 262.54 precipitation 0.1 14400 > th dose independent sin 17 NA
126 262.63 precipitation 0.1 4320 < th dose independent rect. 1 18
127 262.63 precipitation 0.1 4320 < th dose dependent rect. 1 18
138 262.73 precipitation 0.1 4320 < th dose independent rect. 23 20
139 262.73 precipitation 0.1 4320 < th dose dependent rect. 23 20
153 262.79 wind 5.0 43200 < th dose dependent rect. 6 3
166 262.87 precipitation 0.1 4320 < th dose independent rect. 1 20
168 262.87 precipitation 0.1 4320 < th dose dependent rect. 1 20
179 262.92 humidity 80.0 43200 < th dose independent rect. 2 1
244 263.23 precipitation 0.1 4320 > th dose independent sin 2 NA
249 263.25 precipitation 0.1 4320 > th dose independent rect. 3 15
277 263.37 wind 3.0 43200 > th dose independent rect. 3 10
291 263.43 humidity 80.0 14400 > th dose independent rect. 8 12
294 263.44 humidity 80.0 14400 > th dose independent rect. 13 7
317 263.55 humidity 80.0 14400 < th dose independent rect. 13 7
328 263.61 precipitation 0.1 4320 < th dose independent rect. 3 15
329 263.61 precipitation 0.1 4320 < th dose dependent rect. 3 15
341 263.67 wind 3.0 43200 < th dose dependent rect. 3 7
342 263.68 precipitation 0.1 4320 < th dose independent sin 2 NA
344 263.68 precipitation 0.1 4320 < th dose dependent sin 2 NA
346 263.69 precipitation 0.1 14400 > th dose dependent rect. 16 22
396 263.91 humidity 90.0 14400 < th dose dependent rect. 17 2
412 263.95 precipitation 0.1 14400 > th dose dependent no NA NA
423 264.01 precipitation 0.1 14400 > th dose independent rect. 13 17
431 264.07 precipitation 0.1 14400 < th dose independent rect. 16 10
433 264.07 precipitation 0.1 14400 < th dose dependent rect. 16 10
436 264.08 precipitation 0.1 14400 < th dose independent rect. 13 17
437 264.08 precipitation 0.1 14400 < th dose dependent rect. 13 17
441 264.09 precipitation 0.1 14400 > th dose dependent rect. 3 23
447 264.10 precipitation 0.1 14400 > th dose dependent rect. 19 23
451 264.12 humidity 80.0 14400 < th dose independent rect. 8 12
481 264.23 precipitation 0.1 14400 > th dose independent rect. 16 10
488 264.25 humidity 80.0 14400 > th dose independent rect. 10 10
490 264.25 precipitation 0.1 14400 > th dose dependent rect. 5 23
498 264.28 humidity 80.0 14400 < th dose independent rect. 11 9
502 264.29 humidity 80.0 43200 < th dose dependent rect. 22 10
589 264.65 temperature 20.0 14400 > th dose dependent rect. 17 1
622 264.78 temperature 30.0 14400 < th dose independent rect. 14 2
640 264.86 precipitation 0.1 14400 < th dose independent rect. 17 4
642 264.86 precipitation 0.1 14400 < th dose dependent rect. 17 4
673 265.04 precipitation 0.1 14400 > th dose dependent rect. 15 17
696 265.14 precipitation 0.1 14400 > th dose independent rect. 17 4
737 265.28 temperature 30.0 14400 < th dose dependent rect. 17 1
767 265.38 precipitation 0.1 14400 < th dose independent rect. 16 15
769 265.38 precipitation 0.1 14400 < th dose dependent rect. 16 15
778 265.41 precipitation 0.1 14400 > th dose independent rect. 16 15
903 265.75 humidity 90.0 14400 > th dose dependent rect. 5 18
906 265.76 wind 5.0 43200 < th dose dependent rect. 5 8
969 265.93 wind 9.0 43200 < th dose dependent rect. 5 5