Os06g0476900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0476900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.62 | 0.35 | 2.73 | 0.0199 | 0.118 | -0.0973 | -2.08 | 1.67 | 0.006 | 12.7 | 1.478 | 135 | -- | -- |
| 57.2 | 0.352 | 2.73 | -0.0498 | 0.00997 | -0.0856 | -0.278 | -- | 0.00721 | 11.9 | 49.12 | 757 | -- | -- |
| 56.71 | 0.351 | 2.73 | 0.0686 | 0.0179 | -0.0484 | -- | 0.756 | 0.0282 | 12.2 | 21.01 | 1138 | -- | -- |
| 57.02 | 0.352 | 2.74 | -0.0914 | 0.011 | -0.131 | -- | -- | 0.0081 | 21.3 | 46.14 | 1030 | -- | -- |
| 56.57 | 0.35 | 2.73 | 0.0419 | -- | -0.0919 | -- | 0.762 | 0.0322 | -- | 21.02 | 1140 | -- | -- |
| 57.42 | 0.355 | 2.74 | -0.0629 | 0.0114 | -- | -0.261 | -- | -0.0143 | 14.1 | -- | -- | -- | -- |
| 57.67 | 0.356 | 2.74 | -0.0707 | 0.0153 | -- | -- | -- | -0.016 | 10.8 | -- | -- | -- | -- |
| 57.03 | 0.352 | 2.74 | -0.085 | -- | -0.14 | -- | -- | 0.00413 | -- | 45.87 | 1039 | -- | -- |
| 57.04 | 0.352 | 2.73 | -- | 0.0369 | -0.156 | -- | -- | 0.0275 | 20.5 | 45.85 | 1029 | -- | -- |
| 57.69 | 0.355 | 2.74 | -0.0711 | -- | -- | -- | -- | -0.0161 | -- | -- | -- | -- | -- |
| 57.8 | 0.356 | 2.74 | -- | 0.0159 | -- | -- | -- | -0.00815 | 11.1 | -- | -- | -- | -- |
| 57.12 | 0.352 | 2.74 | -- | -- | -0.15 | -- | -- | 0.0174 | -- | 45.94 | 1039 | -- | -- |
| 57.82 | 0.355 | 2.74 | -- | -- | -- | -- | -- | -0.00824 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.67 | radiation | 1 | 10 | < th | dose independent | rect. | 13 | 1 |
| 11 | 44.67 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 27 | 45.07 | humidity | 80 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 28 | 45.10 | humidity | 80 | 90 | > th | dose independent | rect. | 12 | 1 |
| 89 | 48.54 | humidity | 80 | 10 | > th | dose independent | rect. | 14 | 1 |
| 115 | 50.58 | temperature | 20 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 121 | 50.59 | temperature | 20 | 90 | < th | dose independent | rect. | 20 | 1 |
| 138 | 50.90 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 146 | 50.90 | wind | 1 | 270 | < th | dose independent | rect. | 19 | 1 |
| 173 | 50.90 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 181 | 50.90 | wind | 1 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 182 | 50.90 | wind | 1 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 209 | 50.95 | wind | 1 | 720 | < th | dose independent | rect. | 17 | 1 |
| 258 | 51.59 | radiation | 20 | 10 | < th | dose independent | rect. | 14 | 1 |
| 268 | 51.72 | humidity | 90 | 10 | > th | dose independent | rect. | 22 | 1 |
| 274 | 51.76 | humidity | 90 | 90 | > th | dose independent | rect. | 20 | 1 |
| 302 | 52.11 | wind | 1 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 323 | 52.42 | wind | 1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 332 | 52.50 | humidity | 70 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 345 | 52.62 | humidity | 80 | 10 | > th | dose dependent | rect. | 21 | 2 |
| 347 | 52.65 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 1 |
| 359 | 52.71 | humidity | 80 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 370 | 52.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 378 | 52.81 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 1 |
| 388 | 52.94 | wind | 1 | 720 | < th | dose independent | rect. | 14 | 6 |
| 403 | 53.00 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 11 |
| 405 | 53.01 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 9 |
| 415 | 53.03 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 7 |
| 432 | 53.06 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 5 |
| 445 | 53.10 | temperature | 20 | 90 | < th | dose dependent | rect. | 7 | 4 |
| 446 | 53.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 450 | 53.11 | temperature | 20 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 455 | 53.12 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 1 |
| 461 | 53.12 | temperature | 20 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 468 | 53.13 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 479 | 53.13 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 495 | 53.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 578 | 53.30 | wind | 1 | 4320 | < th | dose dependent | rect. | 15 | 6 |
| 581 | 53.30 | humidity | 80 | 90 | > th | dose dependent | rect. | 12 | 10 |
| 691 | 53.60 | wind | 1 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 703 | 53.64 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 3 |
| 711 | 53.67 | wind | 1 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 713 | 53.67 | humidity | 80 | 90 | > th | dose independent | rect. | 12 | 10 |
| 746 | 53.79 | wind | 5 | 10 | > th | dose independent | rect. | 13 | 1 |
| 810 | 53.97 | humidity | 80 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 825 | 54.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 856 | 54.06 | wind | 9 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 860 | 54.06 | wind | 1 | 720 | > th | dose independent | rect. | 10 | 13 |
| 871 | 54.08 | wind | 9 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 881 | 54.09 | temperature | 20 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 921 | 54.16 | wind | 9 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 927 | 54.16 | temperature | 20 | 4320 | < th | dose dependent | rect. | 7 | 15 |
| 932 | 54.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 940 | 54.18 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 1 |
| 946 | 54.18 | radiation | 20 | 30 | < th | dose independent | rect. | 21 | 18 |
| 947 | 54.18 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 951 | 54.19 | wind | 1 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 958 | 54.19 | radiation | 20 | 90 | < th | dose dependent | rect. | 20 | 18 |
| 974 | 54.22 | wind | 1 | 720 | > th | dose independent | rect. | 17 | 6 |
| 1000 | 54.25 | temperature | 20 | 4320 | < th | dose dependent | rect. | 19 | 2 |