Os06g0476100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0476100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.09 | 0.562 | 13.3 | 0.806 | 0.919 | -1.71 | 0.648 | -1.48 | -0.195 | 8.88 | 21.49 | 1400 | -- | -- |
| 144.97 | 0.561 | 13.2 | 1.03 | 0.9 | -1.43 | 0.697 | -- | -0.0857 | 8.69 | 22.24 | 1325 | -- | -- |
| 144.48 | 0.56 | 13.3 | 0.83 | 0.917 | -1.68 | -- | -1.42 | -0.189 | 8.93 | 21.54 | 1403 | -- | -- |
| 146.46 | 0.564 | 13.2 | 1.05 | 0.875 | -1.42 | -- | -- | -0.0878 | 8.64 | 22.3 | 1258 | -- | -- |
| 173.14 | 0.613 | 13.3 | 0.778 | -- | -1.46 | -- | -0.771 | -0.13 | -- | 22.2 | 842 | -- | -- |
| 222.91 | 0.7 | 13.3 | 0.529 | 0.932 | -- | 0.595 | -- | -0.568 | 9.13 | -- | -- | -- | -- |
| 224.14 | 0.701 | 13.3 | 0.55 | 0.928 | -- | -- | -- | -0.567 | 9.2 | -- | -- | -- | -- |
| 175.04 | 0.616 | 13.2 | 1.03 | -- | -1.46 | -- | -- | -0.0705 | -- | 22.27 | 823 | -- | -- |
| 172 | 0.611 | 13.3 | -- | 0.844 | -1.16 | -- | -- | -0.273 | 8.57 | 22.31 | 1153 | -- | -- |
| 274.12 | 0.774 | 13.3 | 0.547 | -- | -- | -- | -- | -0.563 | -- | -- | -- | -- | -- |
| 232.12 | 0.713 | 13.3 | -- | 0.929 | -- | -- | -- | -0.629 | 9.15 | -- | -- | -- | -- |
| 200.71 | 0.66 | 13.3 | -- | -- | -1.26 | -- | -- | -0.234 | -- | 22.39 | 802 | -- | -- |
| 282.01 | 0.784 | 13.4 | -- | -- | -- | -- | -- | -0.623 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 24 | 148.07 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 40 | 148.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 52 | 148.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 63 | 148.96 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 89 | 149.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 99 | 149.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 125 | 149.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 181 | 150.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 317 | 152.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 329 | 152.35 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 343 | 152.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 345 | 152.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 363 | 152.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 510 | 154.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 520 | 154.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 564 | 154.96 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 721 | 156.77 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 762 | 157.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 801 | 157.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 883 | 158.19 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 913 | 158.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 935 | 158.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 996 | 159.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |