Os06g0475800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase.
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Os06g0475800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.23 | 0.589 | 3.28 | 1.43 | 0.291 | -0.502 | 0.549 | 3.38 | 0.475 | 7.7 | 21.11 | 3348 | -- | -- |
| 161.37 | 0.596 | 3.4 | 0.491 | 0.386 | -0.854 | 0.282 | -- | 0.256 | 10.5 | 13.57 | 9447 | -- | -- |
| 158.02 | 0.585 | 3.28 | 1.45 | 0.299 | -0.497 | -- | 3.29 | 0.478 | 7.75 | 21.18 | 3118 | -- | -- |
| 161.69 | 0.596 | 3.4 | 0.503 | 0.385 | -0.845 | -- | -- | 0.257 | 10.6 | 14.8 | 7249 | -- | -- |
| 162.59 | 0.594 | 3.28 | 1.5 | -- | -0.548 | -- | 3.57 | 0.492 | -- | 21.49 | 3370 | -- | -- |
| 168.23 | 0.608 | 3.42 | 0.325 | 0.319 | -- | 0.438 | -- | 0.137 | 7.92 | -- | -- | -- | -- |
| 168.8 | 0.608 | 3.42 | 0.337 | 0.318 | -- | -- | -- | 0.137 | 7.98 | -- | -- | -- | -- |
| 168.83 | 0.605 | 3.4 | 0.631 | -- | -0.545 | -- | -- | 0.282 | -- | 13.26 | 6523 | -- | -- |
| 167.75 | 0.607 | 3.42 | -- | 0.349 | -0.607 | -- | -- | 0.173 | 9.89 | 14.8 | 7249 | -- | -- |
| 174.33 | 0.617 | 3.43 | 0.34 | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
| 171.79 | 0.613 | 3.43 | -- | 0.321 | -- | -- | -- | 0.0993 | 7.91 | -- | -- | -- | -- |
| 174.52 | 0.617 | 3.43 | -- | -- | -0.425 | -- | -- | 0.152 | -- | 14.8 | 7249 | -- | -- |
| 177.38 | 0.622 | 3.44 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 4 | 153.14 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 9 | 153.44 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 10 | 153.44 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 18 | 153.51 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 42 | 153.64 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 55 | 153.72 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 67 | 153.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 95 | 153.92 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 109 | 154.00 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 124 | 154.06 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 129 | 154.08 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 146 | 154.16 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 161 | 154.21 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 172 | 154.22 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 178 | 154.24 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 197 | 154.29 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 207 | 154.33 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 231 | 154.37 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 261 | 154.45 | humidity | 90.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 262 | 154.45 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 264 | 154.45 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 315 | 154.55 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 317 | 154.55 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 321 | 154.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 331 | 154.57 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 387 | 154.67 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 405 | 154.70 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 424 | 154.73 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 433 | 154.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 547 | 154.89 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 556 | 154.91 | humidity | 90.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 571 | 154.93 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 613 | 154.99 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 624 | 154.99 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 18 |
| 629 | 155.00 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 15 |
| 631 | 155.00 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 0 | NA |
| 657 | 155.05 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 719 | 155.13 | humidity | 90.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 720 | 155.13 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 721 | 155.13 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 749 | 155.16 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 766 | 155.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 784 | 155.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 786 | 155.19 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 787 | 155.19 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 811 | 155.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 824 | 155.21 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 825 | 155.21 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 857 | 155.22 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 861 | 155.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 864 | 155.22 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 876 | 155.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 914 | 155.24 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 915 | 155.25 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 916 | 155.25 | radiation | 1.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 917 | 155.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 939 | 155.26 | radiation | 1.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 976 | 155.28 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 982 | 155.28 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 986 | 155.28 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |