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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0475400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF563 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.041) R2 : 0.305
β1 : 0.26 (0.157) R2dD : 0.00489 R2D : 0.0146
β2 : 0.951 (0.11) R2dC : 0.155 R2C : 0.145
β3 : 1.53 (0.3) R2dE : 0.0619 R2E : 0.0156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -16.3 (2.03) R2dD*E : 0.147 R2D*E : 0.015
γ1 : 0.381 (0.0868) R2dN8 : 0.0387 R2N8 : 0.0128
σ : 0.758
deviance : 264.97
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C
peak time of C : 18.9
E
wheather : humidity
threshold : 76.34
memory length : 4
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.6
open length of G : 17.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.11 0.743 3.56 0.264 1.07 1.37 2.63 -17 0.369 18.8 77.49 6 16.5 17.5
280.67 0.786 3.53 0.685 0.963 0.48 2.51 -- 0.332 18 177.8 2 14.4 18.6
264.97 0.758 3.57 0.26 0.951 1.53 -- -16.3 0.381 18.9 76.34 4 16.6 17.4
294.59 0.799 3.52 0.641 1.02 0.592 -- -- 0.353 17.1 287.8 57 14.3 18.9
317.12 0.829 3.53 0.191 -- 2.35 -- -17.1 0.384 -- 76.53 3 16.6 17.4
288.03 0.796 3.52 0.717 1.05 -- 2.52 -- 0.401 18.8 -- -- -- --
304.21 0.817 3.51 0.675 1.05 -- -- -- 0.408 18.8 -- -- -- --
322.91 0.837 3.48 0.786 -- 1.32 -- -- 0.386 -- 96.18 239 13 18.9
305.09 0.814 3.53 -- 1.07 0.644 -- -- 0.273 16.8 825.2 108 13.6 18.9
362.29 0.889 3.49 0.652 -- -- -- -- 0.387 -- -- -- -- --
316.2 0.832 3.53 -- 1.05 -- -- -- 0.333 18.9 -- -- -- --
314.6 0.826 3.52 -- -- -0.961 -- -- 0.287 -- 870.2 655 14.7 20.9
373.49 0.902 3.51 -- -- -- -- -- 0.315 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.22 humidity 80 10 < th dose dependent rect. 16 17
3 257.49 humidity 80 90 < th dose dependent rect. 22 11
5 257.92 humidity 70 90 < th dose independent rect. 6 3
22 258.37 humidity 80 90 < th dose dependent rect. 16 17
23 258.43 humidity 80 90 < th dose dependent rect. 5 4
30 259.09 humidity 70 90 < th dose independent rect. 16 17
32 259.67 radiation 30 90 > th dose dependent rect. 7 1
49 259.80 radiation 30 90 > th dose independent rect. 7 1
77 260.03 radiation 10 30 > th dose dependent rect. 16 16
195 261.25 radiation 20 1440 > th dose dependent rect. 6 1
282 261.48 humidity 80 1440 < th dose dependent rect. 6 1
319 261.51 humidity 70 10 < th dose independent rect. 7 1
394 261.51 humidity 70 10 < th dose dependent rect. 7 1
506 261.56 humidity 80 1440 > th dose independent rect. 6 1
524 261.71 humidity 80 1440 < th dose independent rect. 6 1
541 261.78 humidity 80 1440 < th dose dependent rect. 24 7
542 261.80 humidity 70 4320 < th dose dependent rect. 20 11
555 261.82 humidity 70 4320 < th dose independent rect. 20 11
616 261.92 humidity 70 1440 > th dose independent rect. 20 11
688 262.31 humidity 70 10 < th dose independent rect. 16 17
783 262.65 humidity 80 1440 > th dose independent rect. 3 4
804 262.73 humidity 70 1440 > th dose independent rect. 23 9
843 262.90 humidity 80 10 < th dose dependent sin 11 NA
857 263.03 humidity 70 1440 > th dose independent rect. 2 6
950 264.29 atmosphere 1005 10 > th dose dependent rect. 7 1