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Os06g0474800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 3Fe-4S ferredoxin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.64 (0.0467) R2 : 0.912
β1 : 1.45 (0.171) R2dD : 0.0142 R2D : -0.000608
β2 : 7.51 (0.121) R2dC : 0.743 R2C : 0.716
β3 : -4.84 (0.157) R2dE : 0.183 R2E : 0.161
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.645 (0.0997) R2dN8 : 0.0108 R2N8 : -0.00221
σ : 0.873
deviance : 351.58
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C
peak time of C : 16.9
E
wheather : temperature
threshold : 18.93
memory length : 103
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.68
open length of G : 5.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
346.54 0.875 8.64 1.5 7.52 -4.83 -0.959 1.75 0.648 16.9 19.11 99 6.73 5.02
349.73 0.871 8.64 1.48 7.52 -4.79 -0.979 -- 0.642 16.9 19.06 102 6.7 5.03
348.7 0.87 8.64 1.5 7.51 -4.86 -- 1.69 0.655 16.9 19.01 102 6.72 5.02
351.58 0.873 8.64 1.45 7.51 -4.84 -- -- 0.645 16.9 18.93 103 6.68 5.03
1131.9 1.57 8.46 1.52 -- -7.82 -- 2.75 0.977 -- 8.692 157 0.0157 10.8
731.78 1.27 8.72 1.05 7.93 -- -0.662 -- 0.571 18 -- -- -- --
732.85 1.27 8.72 1.05 7.93 -- -- -- 0.569 18 -- -- -- --
1119.17 1.56 8.43 1.45 -- -7.55 -- -- 1.09 -- 7.38 146 0.0167 10.8
405.62 0.938 8.67 -- 7.46 -4.65 -- -- 0.504 16.9 18.3 104 6.6 5.05
3990.88 2.95 8.58 0.824 -- -- -- -- 0.389 -- -- -- -- --
762.1 1.29 8.74 -- 7.91 -- -- -- 0.451 18.1 -- -- -- --
1175.12 1.6 8.44 -- -- -7.33 -- -- 0.999 -- 5.945 147 0.0156 10.8
4008.8 2.96 8.6 -- -- -- -- -- 0.298 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 361.77 temperature 20.0 90 > th dose dependent rect. 7 5
2 364.43 temperature 20.0 10 > th dose dependent rect. 7 5
3 365.38 temperature 15.0 270 > th dose dependent rect. 5 6
13 383.17 temperature 15.0 270 > th dose dependent rect. 7 2
22 392.45 temperature 20.0 10 > th dose dependent rect. 5 7
24 393.25 temperature 15.0 90 > th dose dependent rect. 20 16
26 394.41 temperature 15.0 10 > th dose dependent rect. 20 16
38 400.82 temperature 20.0 270 > th dose independent rect. 5 6
68 415.83 temperature 20.0 270 > th dose independent rect. 6 4
86 422.72 temperature 20.0 270 > th dose independent rect. 7 2
113 430.39 temperature 25.0 10 > th dose independent rect. 8 4
161 442.21 temperature 20.0 10 > th dose dependent rect. 24 12
167 444.25 temperature 20.0 270 > th dose independent rect. 6 15
295 468.40 temperature 10.0 30 > th dose dependent sin 5 NA
314 471.49 temperature 30.0 30 < th dose dependent sin 5 NA
373 480.63 temperature 30.0 90 < th dose dependent rect. 1 16
403 485.52 temperature 25.0 90 > th dose dependent sin 8 NA
411 486.13 temperature 15.0 270 > th dose independent rect. 17 18
452 491.80 temperature 30.0 90 < th dose dependent rect. 23 18
507 497.88 temperature 15.0 270 > th dose independent rect. 18 16
514 498.65 temperature 10.0 90 > th dose dependent rect. 7 16
552 502.14 temperature 10.0 10 > th dose dependent rect. 8 17
553 502.29 radiation 1.0 270 > th dose independent rect. 5 6
566 502.43 humidity 90.0 90 < th dose independent rect. 7 5
567 502.69 radiation 1.0 270 > th dose independent rect. 7 2
587 504.92 humidity 90.0 10 < th dose independent rect. 8 4
593 505.29 temperature 25.0 90 > th dose independent rect. 20 16
615 507.74 atmosphere 1010.0 270 < th dose independent rect. 8 1
667 511.98 wind 7.0 90 < th dose independent rect. 7 5
673 512.34 precipitation 0.1 1440 < th dose independent rect. 9 4
674 512.34 precipitation 0.1 1440 < th dose dependent rect. 9 4
705 514.47 humidity 60.0 270 > th dose independent rect. 7 2
714 514.76 radiation 20.0 270 < th dose dependent rect. 21 10
716 514.83 wind 7.0 270 < th dose independent rect. 7 2
718 514.92 precipitation 0.1 270 < th dose independent rect. 7 2
719 514.92 precipitation 0.1 270 < th dose dependent rect. 7 2
729 515.57 temperature 10.0 270 > th dose independent rect. 7 2
732 515.57 atmosphere 995.0 270 > th dose independent rect. 7 2
734 515.57 temperature 10.0 270 > th dose independent rect. 9 22
737 515.71 radiation 40.0 270 < th dose independent rect. 7 2
759 517.31 wind 9.0 270 < th dose dependent rect. 7 2
782 518.89 wind 7.0 10 < th dose independent rect. 8 4
787 519.31 atmosphere 1010.0 10 < th dose independent rect. 8 4
807 520.86 wind 9.0 270 < th dose independent rect. 6 15
812 521.04 temperature 10.0 270 > th dose independent rect. 21 9
813 521.04 temperature 30.0 270 < th dose independent rect. 21 9
814 521.04 humidity 50.0 270 > th dose independent rect. 21 9
817 521.04 atmosphere 995.0 270 > th dose independent rect. 21 9
818 521.04 radiation 20.0 270 < th dose independent rect. 21 9
822 521.05 wind 9.0 270 < th dose independent rect. 21 9
844 521.88 radiation 1.0 270 < th dose independent rect. 22 16
849 522.06 atmosphere 1015.0 270 < th dose independent rect. 6 15
850 522.10 radiation 1.0 270 < th dose dependent rect. 22 16
864 522.91 precipitation 0.1 270 < th dose independent rect. 6 15
865 522.91 precipitation 0.1 270 < th dose dependent rect. 6 15
886 524.25 wind 9.0 270 < th dose independent rect. 9 22
889 524.34 atmosphere 1010.0 90 < th dose independent rect. 19 17
895 524.48 wind 9.0 270 < th dose independent rect. 17 17
898 524.52 humidity 50.0 270 > th dose independent rect. 17 17
902 524.69 wind 9.0 270 < th dose dependent rect. 6 5
908 525.01 precipitation 0.1 270 < th dose independent rect. 21 9
909 525.01 precipitation 0.1 270 < th dose dependent rect. 21 9
917 525.35 temperature 10.0 270 > th dose independent rect. 10 7
918 525.35 atmosphere 1015.0 270 < th dose independent rect. 10 7
941 526.14 precipitation 0.1 270 < th dose independent rect. 6 5
942 526.14 precipitation 0.1 270 < th dose dependent rect. 6 5
949 526.36 humidity 50.0 270 > th dose independent rect. 6 5
955 526.43 precipitation 0.1 270 < th dose independent rect. 17 17
956 526.43 precipitation 0.1 270 < th dose dependent rect. 17 17
982 527.66 precipitation 0.1 270 < th dose independent rect. 10 7
983 527.66 precipitation 0.1 270 < th dose dependent rect. 10 7
985 527.70 atmosphere 995.0 270 > th dose independent rect. 6 5
987 527.70 temperature 10.0 270 > th dose independent rect. 11 19