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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0472900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0232) R2 : 8.14e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000943 (0.0489) R2dN8 : 1.05e-06 R2N8 : 8.14e-07
σ : 0.438
deviance : 87.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.26 0.425 2.2 -1.65 0.0448 96.7 -0.527 204 0.0202 1.55 15 90 -- --
87.27 0.438 3.05 0.0538 0.0313 -0.0355 -0.348 -- 0.00363 2.34 15 90 -- --
84.19 0.427 2.23 -1.56 0.0573 96.9 -- 205 0.0188 4.93 15.07 78 -- --
85.18 0.433 3.04 0.129 0.0657 -0.713 -- -- 0.0221 5.91 16.8 75 -- --
84.42 0.428 2.24 -1.54 -- 96.7 -- 204 0.0242 -- 15.05 75 -- --
87.27 0.438 3.05 0.0522 0.0313 -- -0.352 -- 0.00327 2.3 -- -- -- --
87.56 0.438 3.04 0.0615 0.0655 -- -- -- 0.00462 6.12 -- -- -- --
85.4 0.432 3.04 0.131 -- -0.713 -- -- 0.0236 -- 16.8 75 -- --
85.6 0.433 3.04 -- 0.0675 -0.647 -- -- 0.00677 5.84 16.56 55 -- --
87.79 0.438 3.04 0.0633 -- -- -- -- 0.00608 -- -- -- -- --
87.66 0.438 3.05 -- 0.0664 -- -- -- -0.00223 6.07 -- -- -- --
85.84 0.433 3.04 -- -- -0.646 -- -- 0.0081 -- 16.8 75 -- --
87.89 0.438 3.05 -- -- -- -- -- -0.000943 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.99 radiation 20.0 14400 < th dose dependent rect. 23 1
8 74.73 wind 9.0 30 < th dose independent rect. 23 23
10 75.12 wind 9.0 1440 < th dose independent rect. 23 1
11 75.12 temperature 10.0 1440 > th dose independent rect. 23 1
14 75.12 temperature 30.0 1440 < th dose independent rect. 23 1
18 75.12 humidity 50.0 1440 > th dose independent rect. 23 1
28 75.12 atmosphere 995.0 1440 > th dose independent rect. 23 1
29 75.12 radiation 1.0 1440 < th dose independent rect. 23 1
49 75.12 temperature 10.0 1440 > th dose independent rect. 24 23
57 75.13 temperature 25.0 30 > th dose independent rect. 22 1
59 75.19 wind 3.0 30 < th dose independent rect. 22 1
60 75.19 temperature 20.0 30 > th dose dependent rect. 22 1
61 75.20 humidity 80.0 30 > th dose independent rect. 22 1
62 75.24 atmosphere 1005.0 30 > th dose dependent rect. 22 1
64 75.29 wind 5.0 30 < th dose dependent rect. 22 1
73 75.35 humidity 90.0 30 < th dose independent rect. 22 1
74 75.35 atmosphere 1005.0 30 > th dose independent rect. 22 1
76 75.39 precipitation 0.1 30 < th dose independent rect. 22 1
77 75.39 precipitation 0.1 30 < th dose dependent rect. 22 1
80 75.40 temperature 10.0 30 > th dose independent rect. 22 1
82 75.40 temperature 30.0 30 < th dose independent rect. 22 1
83 75.40 humidity 50.0 30 > th dose independent rect. 22 1
86 75.40 atmosphere 995.0 30 > th dose independent rect. 22 1
88 75.40 atmosphere 1010.0 30 < th dose independent rect. 22 1
90 75.40 radiation 1.0 30 < th dose independent rect. 22 1
95 75.40 temperature 10.0 30 > th dose independent rect. 23 23
96 75.40 humidity 50.0 30 > th dose dependent rect. 22 1
97 75.40 radiation 1.0 30 < th dose dependent rect. 22 1
102 75.41 wind 1.0 30 > th dose independent rect. 22 1
107 75.70 atmosphere 1015.0 30 < th dose dependent rect. 22 1
111 75.93 humidity 90.0 30 < th dose dependent rect. 22 1
112 76.04 wind 1.0 30 > th dose dependent rect. 22 1
115 76.18 temperature 30.0 30 < th dose dependent rect. 22 1
166 78.80 atmosphere 1015.0 720 < th dose independent rect. 3 8
168 78.88 atmosphere 995.0 30 > th dose independent rect. 23 23
170 78.90 precipitation 0.1 30 < th dose independent rect. 23 23
171 78.90 precipitation 0.1 30 < th dose dependent rect. 23 23
177 79.28 precipitation 0.1 720 < th dose independent rect. 23 16
178 79.28 precipitation 0.1 720 < th dose dependent rect. 23 16
181 79.44 precipitation 0.1 720 < th dose independent rect. 3 8
182 79.44 precipitation 0.1 720 < th dose dependent rect. 3 8
196 80.24 temperature 25.0 270 > th dose independent rect. 19 8
201 80.37 wind 9.0 720 < th dose independent rect. 3 8
212 80.91 temperature 25.0 90 > th dose independent rect. 21 7
218 81.06 wind 1.0 30 > th dose independent rect. 23 23
224 81.23 temperature 25.0 270 > th dose dependent rect. 19 8
228 81.27 wind 9.0 30 < th dose independent rect. 3 23
229 81.28 precipitation 0.1 1440 < th dose independent rect. 23 1
230 81.28 precipitation 0.1 1440 < th dose dependent rect. 23 1
232 81.31 radiation 1.0 14400 < th dose dependent rect. 3 1
238 81.52 temperature 15.0 720 > th dose independent rect. 3 8
244 81.70 temperature 10.0 30 > th dose dependent rect. 23 23
248 81.76 atmosphere 1015.0 720 < th dose independent rect. 23 16
252 81.85 radiation 1.0 10 < th dose independent rect. 5 1
255 81.85 atmosphere 995.0 720 > th dose independent rect. 3 8
258 81.85 temperature 10.0 720 > th dose independent rect. 11 16
259 81.85 temperature 25.0 90 > th dose dependent rect. 21 8
273 81.96 temperature 20.0 30 > th dose dependent rect. 22 5
283 82.06 temperature 10.0 720 > th dose independent rect. 15 8
284 82.06 temperature 10.0 720 > th dose independent rect. 23 16
285 82.09 atmosphere 995.0 720 > th dose independent rect. 11 16
287 82.13 temperature 20.0 30 > th dose dependent rect. 2 1
288 82.14 temperature 20.0 30 > th dose independent rect. 2 1
289 82.14 atmosphere 1005.0 30 > th dose independent rect. 2 1
290 82.14 atmosphere 1005.0 30 > th dose dependent rect. 2 1
297 82.18 wind 3.0 30 < th dose independent rect. 2 1
299 82.18 humidity 50.0 30 > th dose independent rect. 23 23
302 82.21 wind 5.0 30 < th dose dependent rect. 2 1
308 82.23 humidity 80.0 30 > th dose independent rect. 2 1
311 82.24 temperature 10.0 30 > th dose independent rect. 2 1
313 82.24 temperature 30.0 30 < th dose independent rect. 2 1
314 82.24 humidity 50.0 30 > th dose independent rect. 2 1
318 82.24 atmosphere 1010.0 30 < th dose independent rect. 2 1
320 82.24 radiation 1.0 30 < th dose independent rect. 2 1
325 82.24 precipitation 0.1 30 < th dose independent rect. 2 1
326 82.24 temperature 10.0 30 > th dose independent rect. 3 23
327 82.24 radiation 1.0 30 < th dose dependent rect. 2 1
332 82.24 precipitation 0.1 30 < th dose dependent rect. 2 1
333 82.25 humidity 50.0 30 > th dose dependent rect. 2 1
339 82.28 atmosphere 995.0 720 > th dose independent rect. 15 8
342 82.29 atmosphere 995.0 720 > th dose independent rect. 23 16
358 82.40 atmosphere 1015.0 30 < th dose dependent rect. 2 1
361 82.41 temperature 15.0 720 > th dose independent rect. 5 6
371 82.46 temperature 30.0 30 < th dose dependent rect. 2 1
373 82.46 temperature 15.0 90 > th dose dependent rect. 5 15
376 82.48 wind 1.0 30 > th dose independent rect. 2 1
380 82.49 temperature 20.0 10 < th dose dependent sin 0 NA
400 82.56 wind 9.0 1440 < th dose independent rect. 3 1
401 82.56 temperature 10.0 1440 > th dose independent rect. 3 1
404 82.56 temperature 30.0 1440 < th dose independent rect. 3 1
408 82.56 humidity 50.0 1440 > th dose independent rect. 3 1
417 82.56 atmosphere 995.0 1440 > th dose independent rect. 3 1
418 82.56 radiation 1.0 1440 < th dose independent rect. 3 1
439 82.56 temperature 10.0 1440 > th dose independent rect. 4 23
448 82.56 temperature 10.0 270 > th dose dependent rect. 3 15
453 82.58 temperature 30.0 30 < th dose independent rect. 23 23
454 82.58 temperature 20.0 30 < th dose dependent rect. 3 11
457 82.59 humidity 50.0 720 > th dose independent rect. 3 8
464 82.61 temperature 25.0 270 > th dose independent sin 12 NA
495 82.71 temperature 25.0 270 < th dose independent rect. 19 12
509 82.73 atmosphere 1015.0 720 < th dose independent rect. 23 8
526 82.76 atmosphere 1015.0 720 < th dose independent rect. 23 10
538 82.78 radiation 1.0 720 < th dose dependent rect. 24 11
562 82.82 precipitation 0.1 720 < th dose independent rect. 15 8
566 82.82 precipitation 0.1 720 < th dose dependent rect. 15 8
578 82.85 atmosphere 1015.0 720 < th dose independent rect. 23 18
614 82.87 temperature 15.0 30 > th dose dependent rect. 3 19
645 82.94 temperature 25.0 270 < th dose independent sin 12 NA
647 82.95 radiation 1.0 720 < th dose independent rect. 24 11
650 82.95 atmosphere 1015.0 720 < th dose independent rect. 3 16
663 82.98 humidity 90.0 270 > th dose independent rect. 11 3
664 82.98 humidity 90.0 270 > th dose independent rect. 8 8
686 83.01 atmosphere 1015.0 1440 < th dose independent rect. 16 1
691 83.02 humidity 90.0 270 > th dose dependent rect. 11 3
692 83.02 humidity 90.0 90 > th dose dependent rect. 11 5
696 83.03 radiation 1.0 720 < th dose dependent rect. 7 4
697 83.03 humidity 80.0 270 > th dose dependent rect. 8 7
702 83.05 radiation 1.0 720 < th dose independent rect. 7 4
703 83.05 temperature 15.0 270 > th dose independent rect. 4 14
725 83.07 temperature 15.0 4320 > th dose independent rect. 16 1
732 83.08 temperature 15.0 90 > th dose independent sin 23 NA
769 83.10 temperature 10.0 720 > th dose dependent rect. 3 8
793 83.12 temperature 15.0 4320 > th dose independent rect. 12 5
798 83.12 radiation 1.0 10 < th dose dependent rect. 5 1
837 83.14 temperature 25.0 10 < th dose dependent rect. 11 6
839 83.14 temperature 30.0 270 < th dose dependent rect. 7 8
848 83.15 temperature 15.0 90 > th dose independent sin 10 NA
851 83.15 precipitation 0.1 720 > th dose independent rect. 6 1
852 83.15 precipitation 0.1 720 > th dose independent rect. 8 2
857 83.15 precipitation 0.1 30 < th dose independent rect. 3 23
860 83.15 precipitation 0.1 720 > th dose dependent rect. 6 1
861 83.15 precipitation 0.1 720 > th dose dependent rect. 8 2
862 83.15 humidity 90.0 270 > th dose dependent rect. 8 3
866 83.15 precipitation 0.1 30 < th dose dependent rect. 3 23
876 83.16 atmosphere 995.0 30 > th dose independent rect. 3 23
882 83.16 temperature 25.0 90 > th dose dependent rect. 1 3
896 83.17 precipitation 0.1 720 > th dose independent rect. 6 4
904 83.17 precipitation 0.1 720 > th dose dependent rect. 6 4
922 83.18 precipitation 0.1 270 > th dose independent rect. 7 10
936 83.19 wind 7.0 10 > th dose dependent rect. 12 1
942 83.19 wind 9.0 720 > th dose dependent rect. 21 13
949 83.20 atmosphere 1015.0 720 < th dose independent sin 2 NA
955 83.20 wind 7.0 270 > th dose independent rect. 1 7
957 83.20 temperature 15.0 720 > th dose independent rect. 3 12
959 83.20 wind 9.0 270 > th dose dependent rect. 9 1
973 83.20 wind 7.0 270 > th dose dependent rect. 1 7
986 83.21 precipitation 0.1 720 < th dose independent rect. 19 16
995 83.21 precipitation 0.1 720 < th dose dependent rect. 19 16
998 83.22 temperature 15.0 1440 > th dose independent sin 22 NA
999 83.22 temperature 15.0 1440 < th dose independent sin 23 NA