Os06g0472300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os06g0472300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.58 | 0.386 | 6.64 | 0.154 | 0.477 | -0.904 | -1.03 | 2.27 | 0.196 | 6.42 | 29.98 | 343 | -- | -- |
| 67.69 | 0.383 | 6.62 | 0.344 | 0.51 | -0.669 | -0.966 | -- | 0.185 | 6.43 | 29.6 | 413 | -- | -- |
| 69.84 | 0.389 | 6.64 | 0.213 | 0.501 | -0.882 | -- | 1.34 | 0.188 | 6.04 | 29.86 | 343 | -- | -- |
| 69.72 | 0.389 | 6.62 | 0.317 | 0.533 | -0.743 | -- | -- | 0.189 | 6.12 | 29.67 | 397 | -- | -- |
| 79.31 | 0.415 | 6.63 | 0.305 | -- | -0.57 | -- | 0.972 | 0.208 | -- | 30.71 | 280 | -- | -- |
| 77.01 | 0.411 | 6.63 | 0.46 | 0.24 | -- | -1.37 | -- | 0.181 | 6.95 | -- | -- | -- | -- |
| 81.86 | 0.424 | 6.63 | 0.434 | 0.237 | -- | -- | -- | 0.184 | 6.76 | -- | -- | -- | -- |
| 79.08 | 0.414 | 6.62 | 0.39 | -- | -0.482 | -- | -- | 0.231 | -- | 30.7 | 365 | -- | -- |
| 72.34 | 0.396 | 6.63 | -- | 0.562 | -0.802 | -- | -- | 0.155 | 6.08 | 29.61 | 399 | -- | -- |
| 84.8 | 0.43 | 6.63 | 0.44 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 86.83 | 0.436 | 6.64 | -- | 0.242 | -- | -- | -- | 0.135 | 6.65 | -- | -- | -- | -- |
| 82.96 | 0.424 | 6.63 | -- | -- | -0.535 | -- | -- | 0.187 | -- | 30.8 | 393 | -- | -- |
| 89.9 | 0.443 | 6.65 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 6 |
| 2 | 65.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 9 | 65.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 13 | 66.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 14 | 66.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 54 | 66.44 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 7 |
| 99 | 66.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 103 | 66.95 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 2 |
| 122 | 67.10 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 145 | 67.19 | temperature | 30 | 720 | > th | dose dependent | rect. | 10 | 5 |
| 146 | 67.19 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 165 | 67.22 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 185 | 67.29 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 196 | 67.33 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 23 |
| 198 | 67.34 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 204 | 67.37 | temperature | 30 | 720 | > th | dose dependent | sin | 6 | NA |
| 209 | 67.38 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 8 |
| 212 | 67.38 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 282 | 67.50 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 338 | 67.57 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 15 |
| 348 | 67.58 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 8 |
| 393 | 67.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 505 | 67.80 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 2 |
| 516 | 67.81 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 525 | 67.82 | temperature | 30 | 270 | > th | dose independent | sin | 22 | NA |
| 531 | 67.82 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 555 | 67.83 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 571 | 67.86 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 578 | 67.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 590 | 67.87 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 10 |
| 662 | 67.93 | temperature | 10 | 4320 | > th | dose dependent | sin | 8 | NA |
| 709 | 67.95 | temperature | 30 | 4320 | < th | dose dependent | sin | 9 | NA |
| 752 | 67.97 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 755 | 67.97 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 862 | 68.02 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 967 | 68.03 | radiation | 30 | 720 | > th | dose independent | rect. | 15 | 17 |