Os06g0470800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF159 family protein.
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Os06g0470800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF159 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.39 | 0.466 | 8.29 | -0.508 | 1.42 | -1.06 | -0.936 | 0.215 | -0.588 | 6 | 21.77 | 82 | -- | -- |
| 98.56 | 0.462 | 8.29 | -0.507 | 1.41 | -1.03 | -0.94 | -- | -0.583 | 6.09 | 21.57 | 77 | -- | -- |
| 100.52 | 0.467 | 8.29 | -0.509 | 1.41 | -1.05 | -- | 0.214 | -0.582 | 6.02 | 21.42 | 80 | -- | -- |
| 100.68 | 0.467 | 8.29 | -0.515 | 1.41 | -1.04 | -- | -- | -0.581 | 6.02 | 20.72 | 78 | -- | -- |
| 175.02 | 0.62 | 8.3 | -0.415 | -- | -0.969 | -- | 0.22 | -0.498 | -- | 10.07 | 23 | -- | -- |
| 118.2 | 0.51 | 8.26 | -0.453 | 1.61 | -- | -0.562 | -- | -0.512 | 8.6 | -- | -- | -- | -- |
| 119.21 | 0.511 | 8.26 | -0.471 | 1.61 | -- | -- | -- | -0.512 | 8.63 | -- | -- | -- | -- |
| 175.2 | 0.619 | 8.3 | -0.422 | -- | -0.967 | -- | -- | -0.501 | -- | 9.805 | 34 | -- | -- |
| 107.5 | 0.483 | 8.27 | -- | 1.38 | -1.01 | -- | -- | -0.518 | 6.09 | 20 | 73 | -- | -- |
| 265.91 | 0.762 | 8.3 | -0.466 | -- | -- | -- | -- | -0.498 | -- | -- | -- | -- | -- |
| 125.05 | 0.523 | 8.24 | -- | 1.61 | -- | -- | -- | -0.46 | 8.66 | -- | -- | -- | -- |
| 179.9 | 0.627 | 8.29 | -- | -- | -0.972 | -- | -- | -0.454 | -- | 9.805 | 34 | -- | -- |
| 271.64 | 0.769 | 8.29 | -- | -- | -- | -- | -- | -0.446 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.75 | radiation | 20 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 3 | 98.71 | radiation | 20 | 90 | < th | dose dependent | no | NA | NA |
| 4 | 98.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 5 | 98.88 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 8 | 99.78 | radiation | 20 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 9 | 99.82 | radiation | 20 | 90 | < th | dose dependent | sin | 1 | NA |
| 10 | 99.95 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 23 | 100.36 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 28 | 100.44 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 32 | 100.63 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 42 | 100.99 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 43 | 101.01 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 51 | 101.13 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 58 | 101.27 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 59 | 101.28 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 65 | 101.48 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 66 | 101.49 | radiation | 10 | 90 | < th | dose independent | rect. | 19 | 23 |
| 70 | 101.52 | radiation | 20 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 74 | 101.55 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 99 | 101.90 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 102 | 101.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 104 | 101.94 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 118 | 102.00 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 136 | 102.09 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 137 | 102.09 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 12 |
| 224 | 102.11 | radiation | 20 | 1440 | < th | dose dependent | sin | 1 | NA |
| 232 | 102.14 | radiation | 20 | 270 | < th | dose dependent | rect. | 9 | 9 |
| 233 | 102.16 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 242 | 102.24 | radiation | 10 | 270 | < th | dose independent | rect. | 21 | 22 |
| 243 | 102.25 | radiation | 20 | 1440 | < th | dose independent | sin | 2 | NA |
| 249 | 102.26 | radiation | 20 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 258 | 102.27 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 261 | 102.28 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 285 | 102.30 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 291 | 102.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 21 | 19 |
| 305 | 102.33 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 308 | 102.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 313 | 102.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 318 | 102.36 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 355 | 102.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 361 | 102.45 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 371 | 102.46 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 377 | 102.47 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 386 | 102.47 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 394 | 102.48 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 438 | 102.50 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 448 | 102.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 452 | 102.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 496 | 102.53 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 544 | 102.60 | radiation | 20 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 562 | 102.62 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 8 |
| 606 | 102.65 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 624 | 102.66 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 641 | 102.68 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 646 | 102.70 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 656 | 102.74 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 761 | 102.91 | radiation | 10 | 270 | < th | dose independent | rect. | 9 | 22 |
| 768 | 102.92 | radiation | 10 | 270 | < th | dose independent | rect. | 23 | 18 |