Os06g0470000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os06g0470000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.63 | 0.455 | 11.2 | -0.876 | 0.627 | 0.852 | 0.268 | 4.01 | 0.306 | 1.71 | 19.58 | 4808 | -- | -- |
| 107 | 0.485 | 11 | -0.49 | 0.684 | -0.386 | 0.168 | -- | 0.378 | 1.75 | 18.9 | 10230 | -- | -- |
| 93.88 | 0.451 | 11.2 | -0.877 | 0.623 | 0.848 | -- | 4 | 0.306 | 1.78 | 19.6 | 4791 | -- | -- |
| 106.95 | 0.482 | 11 | -0.589 | 0.647 | -0.457 | -- | -- | 0.341 | 1.74 | 16.1 | 10297 | -- | -- |
| 115.59 | 0.501 | 11.2 | -0.736 | -- | 1.11 | -- | 4.38 | 0.341 | -- | 18.3 | 4579 | -- | -- |
| 110.98 | 0.494 | 11 | -0.379 | 0.616 | -- | 0.248 | -- | 0.43 | 1.78 | -- | -- | -- | -- |
| 111.21 | 0.494 | 11 | -0.387 | 0.618 | -- | -- | -- | 0.429 | 1.88 | -- | -- | -- | -- |
| 126.46 | 0.524 | 11 | -0.764 | -- | -0.739 | -- | -- | 0.332 | -- | 14.1 | 28085 | -- | -- |
| 113.35 | 0.499 | 11 | -- | 0.639 | -0.32 | -- | -- | 0.454 | 1.82 | 18.56 | 6131 | -- | -- |
| 134.28 | 0.541 | 11 | -0.361 | -- | -- | -- | -- | 0.443 | -- | -- | -- | -- | -- |
| 115.15 | 0.502 | 11 | -- | 0.611 | -- | -- | -- | 0.472 | 1.87 | -- | -- | -- | -- |
| 119.67 | 0.51 | 11 | -- | -- | 0.59 | -- | -- | 0.63 | -- | 32.98 | 47520 | -- | -- |
| 137.72 | 0.548 | 11 | -- | -- | -- | -- | -- | 0.483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 2 | 85.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 4 | 86.33 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 6 | 86.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 7 | 86.75 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 11 | 87.42 | humidity | 90 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 12 | 87.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 14 | 87.46 | humidity | 90 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 44 | 88.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 46 | 88.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 47 | 88.37 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 51 | 88.40 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 55 | 88.46 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 56 | 88.46 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 58 | 88.47 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 64 | 88.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 68 | 88.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 80 | 88.78 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 83 | 88.81 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 85 | 88.82 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 94 | 88.88 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 95 | 88.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 100 | 88.90 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 103 | 88.93 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 106 | 88.94 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 111 | 88.95 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 124 | 88.99 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 133 | 89.02 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 134 | 89.02 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 141 | 89.04 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 200 | 89.11 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 213 | 89.13 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 258 | 89.17 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 10 | NA |
| 304 | 89.20 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 306 | 89.21 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 432 | 89.29 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 9 | NA |
| 446 | 89.30 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 21 | NA |
| 494 | 89.33 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 499 | 89.33 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 580 | 89.38 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 617 | 89.40 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 620 | 89.41 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 633 | 89.41 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 636 | 89.41 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 661 | 89.43 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 680 | 89.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 707 | 89.44 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 812 | 89.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 952 | 89.60 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 5 | 2 |