Os06g0365700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0365700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.65 | 0.494 | 8.47 | 1.45 | 0.949 | 1.53 | 0.895 | 0.529 | 0.676 | 19.5 | 20.4 | 1355 | -- | -- |
| 110.89 | 0.49 | 8.48 | 1.36 | 0.95 | 1.44 | 0.904 | -- | 0.655 | 19.5 | 20.6 | 1342 | -- | -- |
| 112.63 | 0.494 | 8.47 | 1.42 | 0.947 | 1.54 | -- | 0.515 | 0.664 | 19.5 | 20.5 | 1346 | -- | -- |
| 113.15 | 0.495 | 8.49 | 1.35 | 0.958 | 1.45 | -- | -- | 0.653 | 19.5 | 20.6 | 1345 | -- | -- |
| 151.94 | 0.574 | 8.44 | 1.59 | -- | 1.45 | -- | 0.566 | 0.711 | -- | 20.4 | 579 | -- | -- |
| 158.1 | 0.589 | 8.41 | 1.97 | 0.944 | -- | 1.08 | -- | 0.983 | 19.8 | -- | -- | -- | -- |
| 161.46 | 0.595 | 8.41 | 1.94 | 0.944 | -- | -- | -- | 0.984 | 19.8 | -- | -- | -- | -- |
| 152.43 | 0.575 | 8.45 | 1.46 | -- | 1.35 | -- | -- | 0.678 | -- | 20.51 | 570 | -- | -- |
| 138.01 | 0.547 | 8.56 | -- | 0.977 | 2.04 | -- | -- | 0.381 | 19.7 | 19.5 | 8311 | -- | -- |
| 209.67 | 0.677 | 8.38 | 1.93 | -- | -- | -- | -- | 0.971 | -- | -- | -- | -- | -- |
| 260.56 | 0.755 | 8.46 | -- | 0.93 | -- | -- | -- | 0.768 | 19.9 | -- | -- | -- | -- |
| 182.15 | 0.629 | 8.52 | -- | -- | 2.23 | -- | -- | 0.327 | -- | 19.4 | 7992 | -- | -- |
| 307.67 | 0.819 | 8.43 | -- | -- | -- | -- | -- | 0.757 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 2 | 107.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 25 | 111.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 49 | 112.14 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 51 | 112.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 59 | 112.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 63 | 112.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 80 | 112.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 86 | 112.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 131 | 112.74 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 187 | 112.91 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 211 | 113.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 227 | 113.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 234 | 113.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 271 | 113.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 327 | 113.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 341 | 113.54 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 344 | 113.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 389 | 113.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 407 | 113.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 434 | 114.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 443 | 114.04 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 22 |
| 455 | 114.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 458 | 114.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 465 | 114.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 542 | 114.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 544 | 114.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 593 | 114.82 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 648 | 115.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 710 | 115.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 746 | 115.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 894 | 116.12 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 967 | 116.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |