Os06g0356200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os06g0356200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.26 | 0.789 | 6 | -2.65 | 0.35 | -0.834 | -0.114 | -4.11 | 0.814 | 15 | 38.51 | 4122 | -- | -- |
| 295.28 | 0.8 | 6 | -2.54 | 0.387 | -0.698 | -0.0204 | -- | 0.966 | 15 | 30 | 11374 | -- | -- |
| 282.24 | 0.782 | 6.01 | -2.66 | 0.349 | -0.852 | -- | -4.2 | 0.804 | 15 | 40 | 4117 | -- | -- |
| 295.2 | 0.8 | 6 | -2.52 | 0.377 | -0.71 | -- | -- | 0.965 | 14.8 | 30 | 11373 | -- | -- |
| 289.13 | 0.792 | 6.01 | -2.69 | -- | -0.915 | -- | -4.29 | 0.807 | -- | 40 | 4121 | -- | -- |
| 312.34 | 0.829 | 6.03 | -2.38 | 0.42 | -- | 0.136 | -- | 0.795 | 14.5 | -- | -- | -- | -- |
| 312.4 | 0.828 | 6.03 | -2.38 | 0.422 | -- | -- | -- | 0.796 | 14.6 | -- | -- | -- | -- |
| 303.6 | 0.812 | 5.99 | -2.53 | -- | -0.714 | -- | -- | 0.957 | -- | 29.98 | 11372 | -- | -- |
| 443.38 | 0.981 | 5.89 | -- | 0.451 | -0.739 | -- | -- | 1.23 | 15.2 | 30 | 2745 | -- | -- |
| 322.83 | 0.84 | 6.03 | -2.39 | -- | -- | -- | -- | 0.786 | -- | -- | -- | -- | -- |
| 461.2 | 1 | 5.97 | -- | 0.468 | -- | -- | -- | 1.06 | 14.6 | -- | -- | -- | -- |
| 450.37 | 0.988 | 5.93 | -- | -- | -0.916 | -- | -- | 1.21 | -- | 30 | 2674 | -- | -- |
| 474 | 1.02 | 5.97 | -- | -- | -- | -- | -- | 1.05 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.96 | wind | 3.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 2 | 269.27 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 18 | 269.32 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 19 | 269.33 | wind | 3.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 24 | 270.23 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 25 | 270.27 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 26 | 270.40 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 43 | 270.52 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 49 | 271.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 50 | 271.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 54 | 272.16 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 57 | 272.27 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 60 | 272.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 61 | 272.50 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 63 | 272.52 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 64 | 272.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 65 | 272.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 66 | 272.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 72 | 273.33 | wind | 3.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 73 | 273.35 | wind | 3.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 77 | 273.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 78 | 273.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 82 | 273.70 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 83 | 273.70 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 105 | 273.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 108 | 273.92 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 2 | 8 |
| 110 | 273.93 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 118 | 274.00 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 121 | 274.01 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 139 | 274.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 143 | 274.30 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 144 | 274.32 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 146 | 274.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 152 | 274.37 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 177 | 274.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 178 | 274.51 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 179 | 274.51 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 181 | 274.52 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 182 | 274.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 183 | 274.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 184 | 274.54 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 187 | 274.59 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 190 | 274.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 204 | 274.85 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 208 | 274.88 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 5 |
| 211 | 274.92 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 227 | 275.02 | radiation | 40.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 237 | 275.06 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 256 | 275.14 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 266 | 275.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 269 | 275.15 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 271 | 275.16 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 316 | 275.34 | wind | 3.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 346 | 275.41 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 351 | 275.43 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 367 | 275.49 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 388 | 275.51 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 404 | 275.53 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 423 | 275.58 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 446 | 275.64 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 502 | 275.81 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 507 | 275.82 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 508 | 275.83 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 510 | 275.84 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 547 | 275.98 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 551 | 276.02 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 554 | 276.02 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 558 | 276.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 572 | 276.10 | wind | 1.0 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 577 | 276.11 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 634 | 276.26 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 646 | 276.32 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 668 | 276.39 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 673 | 276.42 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 677 | 276.44 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 693 | 276.49 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 694 | 276.49 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 697 | 276.52 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 707 | 276.55 | temperature | 25.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 730 | 276.64 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 734 | 276.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 770 | 276.71 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 781 | 276.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 821 | 276.81 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 833 | 276.84 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 836 | 276.85 | radiation | 1.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 854 | 276.91 | radiation | 1.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 862 | 276.92 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 869 | 276.95 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 879 | 276.97 | radiation | 40.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 887 | 276.99 | temperature | 25.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 904 | 277.03 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |