Os06g0350200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0350200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.46 | 0.414 | 10.6 | -1.16 | 0.988 | -1.52 | -0.0912 | -1.99 | -0.255 | 20.6 | 27.49 | 112 | -- | -- |
| 83.14 | 0.425 | 10.6 | -1.51 | 0.972 | -1.44 | -0.383 | -- | -0.316 | 20.5 | 28.14 | 112 | -- | -- |
| 77.49 | 0.41 | 10.6 | -1.15 | 0.989 | -1.52 | -- | -2 | -0.255 | 20.6 | 27.5 | 110 | -- | -- |
| 83.31 | 0.425 | 10.6 | -1.49 | 0.978 | -1.45 | -- | -- | -0.331 | 20.6 | 28.08 | 112 | -- | -- |
| 113.14 | 0.495 | 10.6 | -1.29 | -- | -1.88 | -- | -1.45 | -0.325 | -- | 29.91 | 474 | -- | -- |
| 111.91 | 0.496 | 10.6 | -1.13 | 1.12 | -- | -0.175 | -- | -0.0229 | 19 | -- | -- | -- | -- |
| 111.99 | 0.496 | 10.6 | -1.12 | 1.12 | -- | -- | -- | -0.0233 | 19 | -- | -- | -- | -- |
| 115.09 | 0.5 | 10.6 | -1.57 | -- | -1.86 | -- | -- | -0.345 | -- | 31.48 | 511 | -- | -- |
| 134.93 | 0.544 | 10.6 | -- | 1.09 | -0.809 | -- | -- | -0.0481 | 19.8 | 28.08 | 112 | -- | -- |
| 178.19 | 0.624 | 10.5 | -1.15 | -- | -- | -- | -- | -0.0437 | -- | -- | -- | -- | -- |
| 145.22 | 0.564 | 10.5 | -- | 1.13 | -- | -- | -- | 0.102 | 19 | -- | -- | -- | -- |
| 177.66 | 0.621 | 10.6 | -- | -- | -1.46 | -- | -- | -0.0896 | -- | 38.58 | 476 | -- | -- |
| 212.79 | 0.681 | 10.5 | -- | -- | -- | -- | -- | 0.0834 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.92 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 2 | 77.15 | temperature | 15.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 4 | 77.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 7 | 77.50 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 8 | 77.64 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 13 | 78.06 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 17 | 78.12 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 19 | 78.36 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 22 | 78.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 24 | 78.64 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 38 | 79.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 39 | 79.26 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 47 | 79.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 55 | 79.49 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 56 | 79.51 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 69 | 79.83 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 71 | 79.91 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 77 | 79.99 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 106 | 80.56 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 153 | 81.16 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 166 | 81.36 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 170 | 81.41 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 172 | 81.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 210 | 81.86 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 239 | 82.33 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 280 | 82.74 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 285 | 82.77 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 363 | 83.32 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 379 | 83.45 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 392 | 83.53 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 455 | 83.88 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 469 | 83.94 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 477 | 83.99 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 485 | 84.02 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 506 | 84.08 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 517 | 84.13 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 518 | 84.13 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 550 | 84.23 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 568 | 84.27 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 623 | 84.40 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 18 |
| 723 | 84.63 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 759 | 84.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 767 | 84.70 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 14 |
| 778 | 84.72 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 8 | NA |
| 788 | 84.74 | temperature | 25.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 827 | 84.82 | temperature | 25.0 | 1440 | > th | dose independent | no | NA | NA |
| 832 | 84.83 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 837 | 84.83 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 849 | 84.86 | temperature | 25.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 887 | 84.93 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 906 | 84.96 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 23 |