Os06g0346900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0346900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.87 | 0.646 | 5.23 | 0.349 | 0.347 | -1.28 | 0.094 | -1.3 | -0.526 | 9.84 | 21.7 | 925 | -- | -- |
| 192.77 | 0.647 | 5.2 | 0.617 | 0.36 | -1.13 | 0.367 | -- | -0.474 | 9.92 | 22.1 | 885 | -- | -- |
| 188.85 | 0.64 | 5.22 | 0.334 | 0.342 | -1.25 | -- | -1.26 | -0.517 | 9.76 | 21.8 | 912 | -- | -- |
| 193.49 | 0.648 | 5.18 | 0.678 | 0.339 | -1.19 | -- | -- | -0.433 | 9.67 | 21.94 | 888 | -- | -- |
| 195.18 | 0.651 | 5.23 | 0.343 | -- | -1.32 | -- | -1.26 | -0.504 | -- | 21.82 | 872 | -- | -- |
| 247.5 | 0.738 | 5.26 | 0.241 | 0.567 | -- | 0.468 | -- | -0.813 | 10.2 | -- | -- | -- | -- |
| 248.37 | 0.738 | 5.26 | 0.26 | 0.564 | -- | -- | -- | -0.812 | 10.2 | -- | -- | -- | -- |
| 199.95 | 0.659 | 5.19 | 0.722 | -- | -1.29 | -- | -- | -0.412 | -- | 21.8 | 862 | -- | -- |
| 203.75 | 0.665 | 5.2 | -- | 0.364 | -0.999 | -- | -- | -0.537 | 9.64 | 22.2 | 858 | -- | -- |
| 267.69 | 0.765 | 5.28 | 0.251 | -- | -- | -- | -- | -0.813 | -- | -- | -- | -- | -- |
| 250.15 | 0.74 | 5.27 | -- | 0.563 | -- | -- | -- | -0.841 | 10.2 | -- | -- | -- | -- |
| 211.24 | 0.677 | 5.21 | -- | -- | -1.09 | -- | -- | -0.513 | -- | 22.26 | 853 | -- | -- |
| 269.35 | 0.766 | 5.28 | -- | -- | -- | -- | -- | -0.841 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 2 | 192.24 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 3 | 192.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 4 | 192.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 5 | 192.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 6 | 192.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 7 | 192.84 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 21 | 193.74 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 22 | 193.76 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 23 | 193.76 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 47 | 194.56 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 84 | 195.11 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 109 | 195.49 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 111 | 195.52 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 144 | 195.85 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 166 | 196.17 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 185 | 196.43 | temperature | 25.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 298 | 198.30 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 351 | 198.98 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 368 | 199.31 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 412 | 199.99 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 425 | 200.23 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 431 | 200.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 458 | 200.45 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 470 | 200.49 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 590 | 201.27 | temperature | 10.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 597 | 201.31 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 632 | 201.52 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 678 | 201.72 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 680 | 201.73 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 762 | 202.03 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 789 | 202.13 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 855 | 202.45 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 862 | 202.46 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 895 | 202.59 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 966 | 202.83 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 981 | 202.87 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |