Os06g0346100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0346100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.72 | 0.331 | 10.4 | -0.362 | 0.795 | -0.931 | 0.423 | -0.682 | 0.0741 | 22.4 | 19.84 | 3868 | -- | -- |
| 49.96 | 0.329 | 10.4 | -0.391 | 0.791 | -0.681 | 0.482 | -- | 0.0481 | 22.4 | 21.02 | 3863 | -- | -- |
| 50.43 | 0.331 | 10.4 | -0.371 | 0.794 | -0.947 | -- | -0.748 | 0.0747 | 22.3 | 19.85 | 3881 | -- | -- |
| 50.32 | 0.33 | 10.4 | -0.354 | 0.803 | -0.659 | -- | -- | 0.053 | 22.3 | 21.5 | 2714 | -- | -- |
| 88.17 | 0.437 | 10.4 | -0.379 | -- | -1.1 | -- | -0.961 | 0.0656 | -- | 19.86 | 3713 | -- | -- |
| 60.81 | 0.366 | 10.4 | 0.00935 | 0.827 | -- | 0.465 | -- | 0.256 | 22.5 | -- | -- | -- | -- |
| 61.69 | 0.368 | 10.4 | -0.00903 | 0.825 | -- | -- | -- | 0.255 | 22.4 | -- | -- | -- | -- |
| 82.59 | 0.423 | 10.4 | -0.233 | -- | -0.675 | -- | -- | 0.00886 | -- | 22.25 | 883 | -- | -- |
| 52.1 | 0.336 | 10.4 | -- | 0.783 | -0.501 | -- | -- | 0.116 | 22.4 | 22.01 | 2184 | -- | -- |
| 103.33 | 0.475 | 10.4 | 0.0049 | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
| 61.7 | 0.367 | 10.4 | -- | 0.825 | -- | -- | -- | 0.256 | 22.4 | -- | -- | -- | -- |
| 83.72 | 0.426 | 10.4 | -- | -- | -0.653 | -- | -- | 0.0577 | -- | 22.2 | 847 | -- | -- |
| 103.33 | 0.474 | 10.4 | -- | -- | -- | -- | -- | 0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 47.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 3 | 47.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 4 | 47.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 5 | 47.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 6 | 47.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 8 | 47.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 14 | 47.95 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 17 | 48.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 25 | 48.13 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 26 | 48.15 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 28 | 48.21 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 31 | 48.23 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 34 | 48.26 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 7 |
| 42 | 48.35 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 44 | 48.41 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 57 | 48.54 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 63 | 48.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 66 | 48.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 68 | 48.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 72 | 48.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 83 | 48.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 84 | 48.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 102 | 48.76 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 128 | 48.87 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 151 | 48.98 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 196 | 49.07 | wind | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 202 | 49.09 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 242 | 49.20 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 266 | 49.27 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 326 | 49.39 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 342 | 49.43 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 358 | 49.47 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 404 | 49.56 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 433 | 49.61 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 443 | 49.62 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 453 | 49.64 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 490 | 49.72 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 495 | 49.73 | temperature | 25 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 520 | 49.77 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 538 | 49.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 574 | 49.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 601 | 49.90 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 631 | 49.94 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 701 | 50.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 721 | 50.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 793 | 50.17 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 850 | 50.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 913 | 50.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 917 | 50.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 927 | 50.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 936 | 50.27 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 950 | 50.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 956 | 50.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 21 |
| 957 | 50.28 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 963 | 50.29 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 973 | 50.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 978 | 50.30 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 991 | 50.31 | wind | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 992 | 50.31 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 1000 | 50.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |