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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0345200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tyrosine aminotransferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0277) R2 : 0.477
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.09 (0.103) R2dE : 0.477 R2E : 0.477
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00602 (0.0584) R2dN8 : 1.9e-05 R2N8 : -0.000287
σ : 0.52
deviance : 124.6
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1025
memory length : 261
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.38
open length of G : 4.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.93 0.467 3.55 -0.701 0.557 2.03 -1.42 -0.842 -0.0465 6.67 1017 243 2.95 3.52
99.15 0.464 3.55 -0.674 0.519 1.97 -1.67 -- -0.0562 6.67 1018 223 2.92 3.95
102.19 0.471 3.56 -0.697 0.44 2 -- -1.74 -0.0977 6.41 1020 243 2.94 3.63
106.25 0.48 3.55 -0.683 0.55 1.82 -- -- -0.0558 6.34 1019 217 3.03 3.97
107.61 0.483 3.55 -0.725 -- 2.24 -- -1.99 -0.0952 -- 1023 251 2.81 3.82
129.75 0.534 3.53 -0.653 1.33 -- -1.63 -- -0.0368 6.41 -- -- -- --
136.31 0.547 3.52 -0.675 1.32 -- -- -- -0.0318 6.35 -- -- -- --
112.15 0.493 3.56 -0.692 -- 2.19 -- -- -0.0602 -- 1024 242 2.67 4.27
119.18 0.508 3.53 -- 0.563 1.77 -- -- 0.0187 6.28 1020 212 3.12 3.95
227.03 0.704 3.55 -0.64 -- -- -- -- -0.00357 -- -- -- -- --
148.3 0.57 3.51 -- 1.31 -- -- -- 0.0433 6.38 -- -- -- --
124.6 0.52 3.55 -- -- 2.09 -- -- -0.00602 -- 1025 261 2.38 4.63
237.83 0.72 3.53 -- -- -- -- -- 0.0674 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.20 atmosphere 1015.0 270 < th dose dependent rect. 3 3
2 100.27 temperature 15.0 270 > th dose dependent rect. 3 3
4 100.80 temperature 20.0 270 > th dose independent rect. 3 3
5 101.19 atmosphere 1015.0 270 < th dose dependent rect. 2 5
6 101.42 humidity 80.0 270 > th dose independent rect. 3 3
7 101.50 temperature 10.0 270 > th dose dependent rect. 2 5
8 101.65 wind 9.0 270 < th dose dependent rect. 3 3
11 101.84 humidity 60.0 270 > th dose dependent rect. 3 3
16 102.19 wind 9.0 270 < th dose dependent rect. 2 5
19 102.52 wind 7.0 270 < th dose independent rect. 3 3
20 102.56 atmosphere 1010.0 270 < th dose independent rect. 3 3
25 102.77 temperature 10.0 270 > th dose independent rect. 3 3
27 102.77 temperature 30.0 270 < th dose independent rect. 3 3
28 102.77 humidity 50.0 270 > th dose independent rect. 3 3
31 102.77 atmosphere 995.0 270 > th dose independent rect. 3 3
33 102.77 radiation 20.0 270 < th dose independent rect. 3 3
36 102.77 temperature 10.0 270 > th dose independent rect. 6 21
38 102.84 precipitation 0.1 270 < th dose independent rect. 3 3
39 102.84 precipitation 0.1 270 < th dose dependent rect. 3 3
41 102.86 radiation 40.0 270 < th dose dependent rect. 3 3
42 102.86 humidity 60.0 270 > th dose dependent rect. 2 5
54 103.45 wind 5.0 270 < th dose independent rect. 2 5
55 103.49 precipitation 0.1 270 < th dose independent rect. 6 21
56 103.49 precipitation 0.1 270 < th dose dependent rect. 6 21
63 103.61 humidity 80.0 270 > th dose independent rect. 2 5
65 103.64 atmosphere 1010.0 270 < th dose independent rect. 2 5
66 103.66 wind 9.0 270 < th dose independent rect. 6 21
68 103.79 radiation 20.0 270 < th dose independent rect. 2 5
73 103.87 temperature 10.0 270 > th dose independent rect. 2 5
75 103.87 temperature 30.0 270 < th dose independent rect. 2 5
76 103.87 humidity 50.0 270 > th dose independent rect. 2 5
78 103.87 atmosphere 995.0 270 > th dose independent rect. 2 5
80 103.87 radiation 40.0 270 < th dose independent rect. 2 5
81 103.87 temperature 10.0 270 > th dose independent rect. 7 19
83 103.88 radiation 40.0 270 < th dose dependent rect. 2 5
85 103.91 precipitation 0.1 270 < th dose independent rect. 2 5
86 103.91 precipitation 0.1 270 < th dose dependent rect. 2 5
103 104.14 atmosphere 1015.0 10 < th dose dependent rect. 4 4
110 104.31 precipitation 0.1 270 < th dose independent rect. 7 19
112 104.31 precipitation 0.1 270 < th dose dependent rect. 7 19
121 104.50 wind 9.0 270 < th dose independent rect. 7 19
125 104.55 atmosphere 995.0 270 > th dose independent rect. 6 21
165 104.91 atmosphere 995.0 270 > th dose independent rect. 7 19
205 105.15 temperature 15.0 270 > th dose independent rect. 2 19
281 105.80 temperature 10.0 10 > th dose dependent rect. 4 4
321 106.19 atmosphere 1015.0 270 < th dose independent rect. 2 19
336 106.25 precipitation 0.1 270 < th dose independent rect. 2 19
340 106.25 precipitation 0.1 270 < th dose dependent rect. 2 19
349 106.32 temperature 10.0 270 > th dose independent rect. 21 5
350 106.32 temperature 30.0 270 < th dose independent rect. 21 5
351 106.32 humidity 50.0 270 > th dose independent rect. 21 5
354 106.32 atmosphere 995.0 270 > th dose independent rect. 21 5
355 106.32 radiation 1.0 270 < th dose independent rect. 21 5
363 106.32 radiation 1.0 270 < th dose dependent rect. 21 5
368 106.33 precipitation 0.1 270 < th dose independent rect. 21 5
370 106.33 precipitation 0.1 270 < th dose dependent rect. 21 5
381 106.42 wind 9.0 270 < th dose independent rect. 21 5
387 106.49 wind 9.0 270 < th dose independent rect. 2 19
392 106.51 wind 9.0 10 < th dose dependent rect. 4 4
432 106.73 atmosphere 1000.0 270 > th dose independent rect. 21 14
444 106.80 wind 7.0 10 < th dose independent rect. 4 4
448 106.83 precipitation 0.1 10 < th dose independent rect. 4 4
451 106.83 precipitation 0.1 10 < th dose dependent rect. 4 4
475 106.89 temperature 10.0 10 > th dose independent rect. 4 4
477 106.89 temperature 30.0 10 < th dose independent rect. 4 4
478 106.89 humidity 50.0 10 > th dose independent rect. 4 4
480 106.89 atmosphere 995.0 10 > th dose independent rect. 4 4
481 106.89 atmosphere 1015.0 10 < th dose independent rect. 4 4
482 106.89 temperature 10.0 10 > th dose independent rect. 8 20
487 106.96 precipitation 0.1 10 < th dose independent rect. 8 20
489 106.96 precipitation 0.1 10 < th dose dependent rect. 8 20
497 107.00 wind 1.0 270 > th dose independent rect. 7 19
503 107.06 humidity 50.0 270 > th dose independent rect. 7 19
506 107.08 wind 1.0 270 > th dose independent rect. 6 21
515 107.17 radiation 40.0 10 < th dose independent rect. 4 4
532 107.22 humidity 50.0 270 > th dose independent rect. 6 21
572 107.48 temperature 10.0 270 > th dose dependent rect. 2 19
581 107.54 temperature 10.0 270 > th dose independent rect. 22 3
582 107.54 temperature 30.0 270 < th dose independent rect. 22 3
583 107.54 humidity 50.0 270 > th dose independent rect. 22 3
586 107.54 atmosphere 995.0 270 > th dose independent rect. 22 3
587 107.54 radiation 1.0 270 < th dose independent rect. 22 3
593 107.54 radiation 1.0 270 < th dose dependent rect. 22 3
598 107.55 temperature 10.0 90 > th dose dependent rect. 4 19
599 107.56 wind 9.0 270 < th dose independent rect. 22 3
642 107.61 precipitation 0.1 270 < th dose independent rect. 22 3
644 107.61 precipitation 0.1 270 < th dose dependent rect. 22 3
652 107.63 precipitation 0.1 270 < th dose independent rect. 1 21
655 107.63 precipitation 0.1 270 < th dose dependent rect. 1 21
661 107.66 wind 9.0 10 < th dose independent rect. 8 20
675 107.80 atmosphere 995.0 270 > th dose independent rect. 2 18
687 107.84 wind 9.0 270 < th dose independent rect. 1 21
705 107.95 atmosphere 995.0 10 > th dose independent rect. 8 20
712 107.97 atmosphere 995.0 270 > th dose dependent rect. 21 5
715 108.01 humidity 50.0 270 > th dose dependent rect. 20 6
792 108.26 atmosphere 1015.0 270 < th dose independent rect. 1 21
795 108.27 wind 9.0 270 < th dose independent rect. 15 15
805 108.30 radiation 30.0 270 < th dose independent rect. 15 15
807 108.31 wind 1.0 270 > th dose independent rect. 21 5
849 108.37 humidity 50.0 10 > th dose independent rect. 8 20
884 108.46 temperature 10.0 270 > th dose independent rect. 6 9
885 108.46 atmosphere 1015.0 270 < th dose independent rect. 6 9
886 108.46 temperature 10.0 270 > th dose independent rect. 15 15
887 108.46 humidity 50.0 270 > th dose dependent rect. 22 3
916 108.49 temperature 30.0 270 < th dose dependent rect. 21 5
943 108.61 precipitation 0.1 270 < th dose independent rect. 15 15
946 108.61 precipitation 0.1 270 < th dose dependent rect. 15 15
951 108.64 atmosphere 995.0 270 > th dose independent rect. 6 9
952 108.64 precipitation 0.1 270 < th dose independent rect. 6 9
956 108.64 precipitation 0.1 270 < th dose dependent rect. 6 9
990 108.79 temperature 30.0 90 < th dose dependent rect. 23 4
991 108.80 wind 1.0 270 > th dose independent rect. 6 9