Os06g0344900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAM / CUC2-like protein.
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Os06g0344900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAM / CUC2-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.44 | 0.353 | 3.06 | -0.0792 | 0.245 | 0.338 | 0.126 | -2.48 | -0.0364 | 10.1 | 50.02 | 7 | -- | -- |
| 58.39 | 0.356 | 3.06 | -0.0629 | 0.243 | 0.942 | -0.0171 | -- | -0.0363 | 9.88 | 55.69 | 7 | -- | -- |
| 56.49 | 0.35 | 3.06 | -0.076 | 0.246 | 0.342 | -- | -2.39 | -0.0373 | 10 | 50 | 6 | -- | -- |
| 58.39 | 0.356 | 3.06 | -0.07 | 0.241 | 0.951 | -- | -- | -0.0385 | 9.95 | 55.76 | 7 | -- | -- |
| 59.88 | 0.36 | 3.06 | -0.0743 | -- | 0.524 | -- | -2.27 | -0.0322 | -- | 49.21 | 6 | -- | -- |
| 62.52 | 0.371 | 3.07 | -0.133 | 0.292 | -- | -0.193 | -- | -0.0679 | 10.3 | -- | -- | -- | -- |
| 62.66 | 0.371 | 3.07 | -0.141 | 0.293 | -- | -- | -- | -0.0683 | 10.4 | -- | -- | -- | -- |
| 61.7 | 0.366 | 3.07 | -0.0623 | -- | 1.05 | -- | -- | -0.0327 | -- | 54.7 | 7 | -- | -- |
| 58.51 | 0.356 | 3.06 | -- | 0.24 | 0.987 | -- | -- | -0.0307 | 9.98 | 55.89 | 7 | -- | -- |
| 67.9 | 0.385 | 3.08 | -0.146 | -- | -- | -- | -- | -0.0692 | -- | -- | -- | -- | -- |
| 63.19 | 0.372 | 3.07 | -- | 0.294 | -- | -- | -- | -0.0525 | 10.4 | -- | -- | -- | -- |
| 61.8 | 0.366 | 3.07 | -- | -- | 1.08 | -- | -- | -0.0253 | -- | 54.81 | 7 | -- | -- |
| 68.46 | 0.386 | 3.07 | -- | -- | -- | -- | -- | -0.053 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.02 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 2 | 56.09 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 3 | 56.10 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 5 | 56.11 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 7 | 56.13 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 13 | 56.19 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 14 | 56.19 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 16 | 56.21 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 24 | 56.25 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 26 | 56.25 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 27 | 56.25 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 31 | 56.25 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 33 | 56.25 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 38 | 56.25 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 39 | 56.25 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 40 | 56.25 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 45 | 56.25 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 49 | 56.50 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 50 | 56.62 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 56 | 56.81 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 60 | 56.84 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 63 | 56.91 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 72 | 57.06 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 76 | 57.09 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 88 | 57.13 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 89 | 57.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 92 | 57.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 96 | 57.13 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 105 | 57.13 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 106 | 57.13 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 126 | 57.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 187 | 57.31 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 195 | 57.32 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 218 | 57.37 | temperature | 30.0 | 90 | < th | dose independent | rect. | 11 | 1 |
| 222 | 57.41 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 2 |
| 226 | 57.46 | radiation | 40.0 | 90 | > th | dose independent | rect. | 11 | 1 |
| 239 | 57.57 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 240 | 57.58 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 8 |
| 261 | 57.59 | atmosphere | 1010.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 264 | 57.59 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 579 | 57.67 | radiation | 40.0 | 10 | > th | dose dependent | sin | 21 | NA |
| 730 | 57.78 | radiation | 40.0 | 10 | > th | dose dependent | no | NA | NA |
| 937 | 57.82 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 939 | 57.82 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 12 | 1 |