Os06g0343900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0343900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.35 | 0.73 | 5.93 | 0.413 | 2.35 | -2.19 | 2.1 | -0.467 | -0.293 | 9.24 | 21.3 | 1414 | -- | -- |
| 237.45 | 0.718 | 5.93 | 0.407 | 2.37 | -2 | 2.25 | -- | -0.296 | 9.17 | 21.8 | 1411 | -- | -- |
| 255.13 | 0.744 | 5.93 | 0.459 | 2.36 | -2.09 | -- | -0.225 | -0.256 | 9.35 | 21.88 | 1505 | -- | -- |
| 250.19 | 0.737 | 5.92 | 0.4 | 2.33 | -1.88 | -- | -- | -0.232 | 9.13 | 22.2 | 1368 | -- | -- |
| 508.92 | 1.05 | 6 | 0.321 | -- | -2.02 | -- | -0.433 | -0.26 | -- | 22.3 | 890 | -- | -- |
| 371.68 | 0.904 | 6.05 | -0.361 | 2.37 | -- | 2.04 | -- | -0.864 | 9.35 | -- | -- | -- | -- |
| 386.68 | 0.921 | 6.05 | -0.286 | 2.36 | -- | -- | -- | -0.862 | 9.37 | -- | -- | -- | -- |
| 403.72 | 0.936 | 5.89 | 0.557 | -- | -2.62 | -- | -- | 0.114 | -- | 25.3 | 728 | -- | -- |
| 253.75 | 0.742 | 5.92 | -- | 2.33 | -1.81 | -- | -- | -0.291 | 9.16 | 22.29 | 1368 | -- | -- |
| 713.12 | 1.25 | 6.11 | -0.299 | -- | -- | -- | -- | -0.853 | -- | -- | -- | -- | -- |
| 388.84 | 0.922 | 6.04 | -- | 2.36 | -- | -- | -- | -0.83 | 9.38 | -- | -- | -- | -- |
| 408.98 | 0.942 | 5.92 | -- | -- | -2.51 | -- | -- | 0.00845 | -- | 25.25 | 710 | -- | -- |
| 715.47 | 1.25 | 6.11 | -- | -- | -- | -- | -- | -0.82 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 3 | 237.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 8 | 238.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 9 | 238.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 14 | 238.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 16 | 238.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 86 | 240.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 100 | 241.40 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 208 | 243.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 217 | 243.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 254 | 243.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 337 | 245.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 362 | 245.36 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 448 | 246.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 532 | 247.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 620 | 248.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 653 | 249.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 762 | 250.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 766 | 250.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 795 | 250.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 822 | 251.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 830 | 251.20 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 833 | 251.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 875 | 251.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 877 | 251.62 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 882 | 251.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 889 | 251.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 901 | 251.87 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 914 | 251.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 916 | 251.99 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 942 | 252.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 943 | 252.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 950 | 252.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 967 | 252.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |