FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0343600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.31 (0.0343) R2 : 0.595
β1 : 1.9 (0.129) R2dD : 0.221 R2D : 0.133
β2 : 1.22 (0.0906) R2dC : 0.172 R2C : 0.258
β3 : 2.14 (0.158) R2dE : 0.216 R2E : 0.199
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0688 (0.0791) R2dN8 : 0.0011 R2N8 : -0.0142
σ : 0.628
deviance : 181.85
__
_____
C
peak time of C : 6.21
E
wheather : temperature
threshold : 25.95
memory length : 154
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.27 0.631 5.32 1.85 1.23 2.17 0.734 0.293 0.0612 6.31 25.81 143 -- --
180.38 0.626 5.31 1.9 1.22 2.15 0.779 -- 0.0735 6.3 25.94 147 -- --
181.52 0.627 5.32 1.83 1.23 2.17 -- 0.465 0.0517 6.26 25.87 142 -- --
181.85 0.628 5.31 1.9 1.22 2.14 -- -- 0.0688 6.21 25.95 154 -- --
229.53 0.706 5.31 2.09 -- 2.81 -- 0.0799 0.204 -- 29.37 258 -- --
246.85 0.737 5.41 1.36 1.56 -- 0.644 -- -0.386 5.43 -- -- -- --
247.87 0.737 5.41 1.37 1.56 -- -- -- -0.389 5.4 -- -- -- --
229.54 0.706 5.31 2.1 -- 2.81 -- -- 0.207 -- 29.39 258 -- --
267.11 0.761 5.39 -- 1.38 1.37 -- -- -0.291 5.86 25.74 125 -- --
375.07 0.905 5.43 1.42 -- -- -- -- -0.35 -- -- -- -- --
297.02 0.806 5.45 -- 1.59 -- -- -- -0.541 5.36 -- -- -- --
336.12 0.854 5.4 -- -- 2.19 -- -- -0.175 -- 30.7 246 -- --
428.14 0.966 5.47 -- -- -- -- -- -0.507 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.18 temperature 25 90 < th dose dependent rect. 1 22
2 176.84 temperature 25 90 < th dose dependent rect. 23 23
4 177.28 temperature 15 90 > th dose dependent rect. 6 22
5 177.74 temperature 30 90 < th dose dependent rect. 11 22
11 179.27 temperature 25 270 < th dose dependent rect. 9 21
16 179.79 temperature 30 30 < th dose dependent rect. 3 23
28 181.34 temperature 30 270 < th dose dependent rect. 14 16
66 183.21 temperature 25 90 < th dose dependent no NA NA
71 183.28 temperature 30 90 < th dose dependent rect. 15 18
73 183.28 temperature 25 90 < th dose dependent rect. 13 23
86 183.86 temperature 30 10 < th dose dependent rect. 14 22
98 184.22 temperature 30 10 < th dose dependent rect. 15 18
119 184.64 temperature 30 30 < th dose dependent rect. 19 23
125 184.85 temperature 25 10 < th dose dependent rect. 1 23
131 184.98 temperature 15 10 > th dose dependent rect. 21 23
138 185.11 temperature 25 90 < th dose dependent rect. 17 23
181 185.93 temperature 20 1440 < th dose independent rect. 5 1
240 186.99 temperature 10 270 > th dose dependent rect. 17 23
287 187.77 temperature 25 30 < th dose dependent rect. 5 23
318 188.20 temperature 20 270 > th dose independent rect. 5 22
323 188.29 temperature 15 270 > th dose dependent rect. 21 13
385 189.37 temperature 20 1440 > th dose independent rect. 5 2
406 189.68 temperature 25 1440 < th dose dependent rect. 17 5
417 189.93 temperature 25 720 < th dose dependent rect. 6 16
458 190.51 temperature 15 270 > th dose dependent sin 9 NA
469 190.58 temperature 15 10 > th dose dependent no NA NA
476 190.67 temperature 25 1440 < th dose dependent rect. 18 1
481 190.73 temperature 25 1440 < th dose dependent rect. 16 11
482 190.74 temperature 25 1440 < th dose dependent rect. 16 13
493 190.84 temperature 25 720 < th dose dependent sin 21 NA
539 191.16 temperature 25 1440 < th dose dependent sin 15 NA
586 191.46 temperature 30 270 < th dose dependent sin 9 NA
593 191.50 temperature 25 1440 < th dose dependent rect. 11 19
718 192.27 temperature 25 1440 < th dose dependent rect. 16 20
813 192.76 temperature 25 1440 < th dose dependent rect. 24 23
846 192.94 temperature 25 1440 < th dose dependent no NA NA
870 193.10 temperature 25 1440 < th dose dependent rect. 4 23
886 193.16 temperature 25 1440 < th dose dependent rect. 20 23
933 193.39 wind 7 43200 < th dose independent rect. 10 2
969 193.54 wind 9 43200 > th dose dependent rect. 18 13
985 193.64 wind 7 43200 > th dose independent rect. 10 3