Os06g0343200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0343200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.39 | 0.454 | 8.56 | -2.02 | 0.589 | 1.49 | -0.37 | 1.89 | -0.507 | 19.1 | 15.22 | 15 | -- | -- |
| 96.55 | 0.458 | 8.6 | -2.26 | 0.575 | 1.53 | -0.57 | -- | -0.575 | 19.3 | 16.31 | 19 | -- | -- |
| 93.75 | 0.451 | 8.56 | -2.01 | 0.589 | 1.48 | -- | 1.89 | -0.507 | 19.1 | 15.22 | 14 | -- | -- |
| 96.73 | 0.458 | 8.59 | -2.27 | 0.591 | 1.4 | -- | -- | -0.583 | 19.1 | 17.22 | 18 | -- | -- |
| 104.9 | 0.477 | 8.55 | -2.1 | -- | 1.82 | -- | 1.9 | -0.551 | -- | 12.08 | 204 | -- | -- |
| 120.04 | 0.514 | 8.54 | -1.97 | 0.857 | -- | 0.387 | -- | -0.36 | 17 | -- | -- | -- | -- |
| 120.4 | 0.514 | 8.54 | -1.97 | 0.86 | -- | -- | -- | -0.358 | 17.1 | -- | -- | -- | -- |
| 105.33 | 0.478 | 8.58 | -2.31 | -- | 1.43 | -- | -- | -0.602 | -- | 20.7 | 265 | -- | -- |
| 218.81 | 0.693 | 8.5 | -- | 0.742 | 0.492 | -- | -- | -0.188 | 17.6 | 24.1 | 4 | -- | -- |
| 159.16 | 0.589 | 8.53 | -2 | -- | -- | -- | -- | -0.38 | -- | -- | -- | -- | -- |
| 222.63 | 0.698 | 8.49 | -- | 0.895 | -- | -- | -- | -0.139 | 17.1 | -- | -- | -- | -- |
| 235.3 | 0.714 | 8.5 | -- | -- | 1.01 | -- | -- | -0.236 | -- | 24.31 | 269 | -- | -- |
| 264.68 | 0.759 | 8.48 | -- | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.70 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 3 | 92.54 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 6 | 93.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 11 | 93.44 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 14 | 93.50 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 17 | 93.62 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 25 | 94.04 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 27 | 94.17 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 35 | 94.37 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 41 | 94.47 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 42 | 94.55 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 43 | 94.57 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 56 | 94.78 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 66 | 95.14 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 67 | 95.16 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 71 | 95.30 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 106 | 95.97 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 131 | 96.35 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 136 | 96.42 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 150 | 96.57 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 198 | 97.06 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 210 | 97.19 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 264 | 97.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 401 | 98.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 412 | 98.66 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 415 | 98.68 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 427 | 98.80 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 14 |
| 446 | 98.94 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 451 | 98.97 | temperature | 15.0 | 10 | > th | dose dependent | sin | 18 | NA |
| 455 | 99.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 457 | 99.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 461 | 99.03 | temperature | 30.0 | 10 | < th | dose dependent | sin | 18 | NA |
| 516 | 99.30 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 570 | 99.63 | temperature | 30.0 | 270 | < th | dose dependent | sin | 19 | NA |
| 604 | 99.83 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 652 | 100.05 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 15 |
| 662 | 100.11 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 663 | 100.11 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 675 | 100.16 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 723 | 100.37 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 725 | 100.38 | temperature | 25.0 | 10 | < th | dose dependent | sin | 21 | NA |
| 759 | 100.47 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 9 | 9 |
| 809 | 100.62 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 828 | 100.66 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 845 | 100.69 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 16 |
| 886 | 100.78 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 899 | 100.83 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 14 |
| 930 | 100.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 12 |
| 972 | 100.93 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 12 |