Os06g0343000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0343000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.51 | 0.35 | 8.54 | -1.04 | 0.382 | -1.18 | -0.295 | -0.854 | -0.524 | 3.7 | 30.8 | 237 | -- | -- |
| 56.25 | 0.349 | 8.55 | -1.13 | 0.346 | -1.09 | -0.498 | -- | -0.535 | 3.44 | 31.41 | 198 | -- | -- |
| 55.68 | 0.348 | 8.53 | -1 | 0.394 | -1.19 | -- | -1.05 | -0.512 | 3.39 | 31.08 | 204 | -- | -- |
| 56.83 | 0.351 | 8.55 | -1.18 | 0.385 | -1.2 | -- | -- | -0.55 | 3.19 | 31.58 | 186 | -- | -- |
| 61.1 | 0.364 | 8.53 | -0.938 | -- | -0.855 | -- | -0.827 | -0.48 | -- | 28.1 | 364 | -- | -- |
| 73.33 | 0.401 | 8.51 | -0.891 | 0.00332 | -- | -0.772 | -- | -0.348 | 4.72 | -- | -- | -- | -- |
| 74.66 | 0.405 | 8.51 | -0.888 | 0.0629 | -- | -- | -- | -0.344 | 22.4 | -- | -- | -- | -- |
| 62.15 | 0.367 | 8.54 | -1.09 | -- | -0.871 | -- | -- | -0.496 | -- | 30.81 | 347 | -- | -- |
| 88.57 | 0.441 | 8.51 | -- | 0.25 | -0.806 | -- | -- | -0.341 | 1.38 | 36.73 | 91 | -- | -- |
| 74.9 | 0.404 | 8.51 | -0.887 | -- | -- | -- | -- | -0.344 | -- | -- | -- | -- | -- |
| 95.46 | 0.457 | 8.49 | -- | 0.0603 | -- | -- | -- | -0.245 | 21.3 | -- | -- | -- | -- |
| 91.12 | 0.445 | 8.5 | -- | -- | -0.532 | -- | -- | -0.305 | -- | 38.52 | 280 | -- | -- |
| 95.67 | 0.457 | 8.49 | -- | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 3 | 53.42 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 7 | 53.53 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 28 | 54.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 41 | 54.29 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 79 | 54.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 97 | 55.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 110 | 55.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 118 | 55.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 124 | 55.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 131 | 55.50 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 145 | 55.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 149 | 55.66 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 161 | 55.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 172 | 55.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 195 | 55.93 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 203 | 55.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 209 | 56.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 222 | 56.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 276 | 56.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 309 | 56.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 314 | 56.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 328 | 56.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 337 | 56.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 353 | 56.64 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 20 |
| 402 | 56.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 436 | 56.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 541 | 57.16 | temperature | 25 | 720 | > th | dose independent | rect. | 24 | 13 |
| 557 | 57.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 567 | 57.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 606 | 57.34 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 21 |
| 614 | 57.35 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 669 | 57.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 719 | 57.56 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 725 | 57.57 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 875 | 57.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 878 | 57.85 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 983 | 58.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 13 |