Os06g0342600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os06g0342600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.39 | 0.389 | 6.33 | 0.603 | 0.27 | -0.745 | -0.108 | 1.88 | 0.0812 | 21.2 | 21.72 | 1652 | -- | -- |
| 70.93 | 0.392 | 6.4 | 0.136 | 0.242 | -0.635 | 0.0866 | -- | -0.0437 | 21.4 | 18.01 | 5908 | -- | -- |
| 68.41 | 0.385 | 6.33 | 0.605 | 0.276 | -0.749 | -- | 1.87 | 0.0814 | 21 | 21.6 | 1681 | -- | -- |
| 70.5 | 0.391 | 6.39 | 0.221 | 0.243 | -0.755 | -- | -- | -0.0314 | 21.8 | 16.7 | 5743 | -- | -- |
| 72.37 | 0.396 | 6.32 | 0.574 | -- | -0.729 | -- | 1.72 | 0.0846 | -- | 21.48 | 1541 | -- | -- |
| 83.1 | 0.427 | 6.43 | -0.179 | 0.236 | -- | -0.115 | -- | -0.217 | 21.5 | -- | -- | -- | -- |
| 83.14 | 0.427 | 6.43 | -0.175 | 0.238 | -- | -- | -- | -0.216 | 21.3 | -- | -- | -- | -- |
| 73.98 | 0.401 | 6.38 | 0.222 | -- | -0.75 | -- | -- | -0.0313 | -- | 16.6 | 5830 | -- | -- |
| 71.14 | 0.393 | 6.4 | -- | 0.263 | -0.665 | -- | -- | -0.0894 | 21.5 | 17.5 | 4810 | -- | -- |
| 86.43 | 0.434 | 6.42 | -0.173 | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
| 83.94 | 0.429 | 6.42 | -- | 0.238 | -- | -- | -- | -0.197 | 21.3 | -- | -- | -- | -- |
| 74.8 | 0.403 | 6.39 | -- | -- | -0.668 | -- | -- | -0.0915 | -- | 17.3 | 4484 | -- | -- |
| 87.23 | 0.436 | 6.42 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.62 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 3 | 64.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 24 | 65.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 29 | 65.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 43 | 65.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 54 | 65.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 59 | 66.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 61 | 66.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 110 | 66.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 111 | 66.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 157 | 67.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 168 | 67.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 184 | 67.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 225 | 67.70 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 258 | 67.95 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 277 | 68.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 318 | 68.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 322 | 68.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 323 | 68.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 342 | 68.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 354 | 68.27 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 399 | 68.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 421 | 68.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 430 | 68.45 | temperature | 25 | 4320 | > th | dose dependent | sin | 4 | NA |
| 470 | 68.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 487 | 68.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 489 | 68.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 506 | 68.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 509 | 68.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 523 | 68.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 534 | 68.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 607 | 68.78 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 657 | 68.85 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 678 | 68.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 688 | 68.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 691 | 68.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 696 | 68.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 731 | 68.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 861 | 69.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 908 | 69.09 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 968 | 69.13 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 984 | 69.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |