Os06g0342500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
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Os06g0342500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.87 | 0.239 | 9.69 | 1.65 | 0.23 | -0.927 | 0.194 | 1.31 | 0.491 | 4 | 20.09 | 1504 | -- | -- |
| 27.2 | 0.243 | 9.74 | 1.29 | 0.226 | -0.993 | 0.283 | -- | 0.392 | 3.99 | 17.48 | 1497 | -- | -- |
| 25.96 | 0.237 | 9.69 | 1.66 | 0.241 | -0.932 | -- | 1.33 | 0.492 | 3.74 | 20.03 | 1471 | -- | -- |
| 27.25 | 0.243 | 9.74 | 1.29 | 0.29 | -1.08 | -- | -- | 0.389 | 3.48 | 16.27 | 1337 | -- | -- |
| 27.76 | 0.245 | 9.69 | 1.69 | -- | -0.97 | -- | 1.45 | 0.501 | -- | 20.53 | 1753 | -- | -- |
| 50.45 | 0.333 | 9.78 | 0.938 | 0.199 | -- | 0.231 | -- | 0.177 | 4.47 | -- | -- | -- | -- |
| 50.57 | 0.333 | 9.78 | 0.936 | 0.2 | -- | -- | -- | 0.176 | 4.06 | -- | -- | -- | -- |
| 29.31 | 0.252 | 9.73 | 1.32 | -- | -1.03 | -- | -- | 0.405 | -- | 17.54 | 1772 | -- | -- |
| 64.14 | 0.373 | 9.79 | -- | 0.302 | -0.56 | -- | -- | 0.167 | 2.71 | 21.29 | 1058 | -- | -- |
| 52.74 | 0.339 | 9.78 | 0.944 | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
| 73.66 | 0.401 | 9.81 | -- | 0.218 | -- | -- | -- | 0.0718 | 4 | -- | -- | -- | -- |
| 64.21 | 0.373 | 9.79 | -- | -- | -0.674 | -- | -- | 0.172 | -- | 20.14 | 331 | -- | -- |
| 76.26 | 0.408 | 9.81 | -- | -- | -- | -- | -- | 0.0767 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 2 | 25.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 5 | 25.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 21 | 25.53 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 23 | 25.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 108 | 25.89 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 110 | 25.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 115 | 25.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 116 | 25.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 148 | 25.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 183 | 26.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 194 | 26.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 290 | 26.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 388 | 26.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 449 | 26.45 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 459 | 26.46 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 480 | 26.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 485 | 26.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 634 | 26.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 743 | 26.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 775 | 26.68 | temperature | 20 | 1440 | > th | dose dependent | sin | 6 | NA |
| 991 | 26.89 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |