Os06g0342200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C).
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Os06g0342200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.22 | 0.183 | 14.4 | -0.366 | 0.435 | 0.252 | 0.371 | -0.361 | -0.0371 | 16.2 | 20.8 | 897 | -- | -- |
| 15.59 | 0.184 | 14.4 | -0.294 | 0.423 | 0.283 | 0.43 | -- | -0.0289 | 16.1 | 20.9 | 922 | -- | -- |
| 15.59 | 0.184 | 14.4 | -0.368 | 0.441 | 0.257 | -- | -0.377 | -0.0382 | 16.3 | 20.9 | 932 | -- | -- |
| 16.01 | 0.186 | 14.4 | -0.291 | 0.438 | 0.296 | -- | -- | -0.0199 | 16.2 | 20.7 | 934 | -- | -- |
| 25.69 | 0.236 | 14.4 | -0.369 | -- | 0.215 | -- | -0.391 | -0.0525 | -- | 21.4 | 745 | -- | -- |
| 17.98 | 0.199 | 14.4 | -0.177 | 0.425 | -- | 0.448 | -- | 0.0488 | 16.5 | -- | -- | -- | -- |
| 18.51 | 0.201 | 14.4 | -0.174 | 0.43 | -- | -- | -- | 0.0511 | 16.6 | -- | -- | -- | -- |
| 26 | 0.237 | 14.4 | -0.291 | -- | 0.253 | -- | -- | -0.0389 | -- | 20.8 | 629 | -- | -- |
| 17.92 | 0.197 | 14.4 | -- | 0.443 | 0.174 | -- | -- | 0.0168 | 16.4 | 22.4 | 1042 | -- | -- |
| 28.33 | 0.249 | 14.4 | -0.19 | -- | -- | -- | -- | 0.0399 | -- | -- | -- | -- | -- |
| 19.3 | 0.206 | 14.4 | -- | 0.433 | -- | -- | -- | 0.0705 | 16.6 | -- | -- | -- | -- |
| 27.84 | 0.246 | 14.4 | -- | -- | 0.163 | -- | -- | 0.00974 | -- | 22.4 | 522 | -- | -- |
| 29.28 | 0.253 | 14.4 | -- | -- | -- | -- | -- | 0.061 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 4 | 14.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 8 | 14.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 10 | 14.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 12 | 14.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 36 | 14.50 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 40 | 14.51 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 13 |
| 46 | 14.53 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 47 | 14.53 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 53 | 14.54 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 15 |
| 63 | 14.56 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 72 | 14.58 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 12 |
| 87 | 14.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 92 | 14.61 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 10 |
| 100 | 14.62 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 11 |
| 117 | 14.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 166 | 14.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 172 | 14.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 181 | 14.71 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 211 | 14.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 229 | 14.75 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 328 | 14.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 24 | 23 |
| 484 | 15.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 533 | 15.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 573 | 15.08 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 583 | 15.10 | temperature | 20 | 720 | > th | dose independent | sin | 2 | NA |
| 584 | 15.10 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 588 | 15.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 807 | 15.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 811 | 15.25 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 815 | 15.25 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 869 | 15.28 | wind | 9 | 14400 | > th | dose independent | sin | 6 | NA |
| 961 | 15.33 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 11 |