Os06g0342100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Signal recognition particle 19 kDa protein (SRP19).
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Os06g0342100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Signal recognition particle 19 kDa protein (SRP19).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.48 | 0.276 | 9.63 | 0.096 | 0.234 | 1.41 | -0.513 | 0.705 | 0.00719 | 5.24 | 27.59 | 42 | -- | -- |
| 35.09 | 0.276 | 9.62 | 0.223 | 0.219 | 1.41 | -0.346 | -- | 0.0379 | 5.47 | 27.93 | 53 | -- | -- |
| 34.99 | 0.276 | 9.63 | 0.127 | 0.23 | 1.41 | -- | 0.522 | 0.0177 | 5.26 | 27.51 | 57 | -- | -- |
| 35.38 | 0.277 | 9.62 | 0.217 | 0.226 | 1.4 | -- | -- | 0.039 | 5.24 | 27.73 | 58 | -- | -- |
| 36.85 | 0.283 | 9.63 | 0.175 | -- | 1.53 | -- | 0.483 | 0.0375 | -- | 28.76 | 70 | -- | -- |
| 62.7 | 0.371 | 9.69 | -0.129 | 0.605 | -- | -0.0687 | -- | -0.266 | 3.45 | -- | -- | -- | -- |
| 62.72 | 0.371 | 9.69 | -0.128 | 0.605 | -- | -- | -- | -0.265 | 3.44 | -- | -- | -- | -- |
| 37.1 | 0.284 | 9.62 | 0.25 | -- | 1.53 | -- | -- | 0.0394 | -- | 29.78 | 60 | -- | -- |
| 36.5 | 0.281 | 9.63 | -- | 0.255 | 1.31 | -- | -- | -0.00267 | 5 | 27.65 | 52 | -- | -- |
| 83.22 | 0.426 | 9.69 | -0.103 | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
| 63.15 | 0.372 | 9.68 | -- | 0.602 | -- | -- | -- | -0.251 | 3.44 | -- | -- | -- | -- |
| 38.6 | 0.289 | 9.63 | -- | -- | 1.46 | -- | -- | 0.000631 | -- | 29.93 | 53 | -- | -- |
| 83.49 | 0.427 | 9.68 | -- | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 3 | 34.08 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 4 | 34.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 7 | 34.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 8 | 34.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 11 | 34.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 15 | 34.87 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 18 | 35.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 20 | 35.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 25 | 35.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 28 | 35.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 29 | 35.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 54 | 36.44 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 55 | 36.44 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 68 | 36.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 97 | 37.03 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 171 | 38.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 224 | 38.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 275 | 39.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 315 | 39.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 380 | 40.08 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 416 | 40.21 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 496 | 40.60 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 516 | 40.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 568 | 40.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 618 | 41.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 622 | 41.17 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 629 | 41.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 703 | 41.50 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 731 | 41.61 | temperature | 25 | 90 | < th | dose dependent | sin | 5 | NA |
| 733 | 41.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 761 | 41.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 766 | 41.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 790 | 41.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 815 | 41.95 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 819 | 41.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 822 | 41.96 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 857 | 42.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 861 | 42.07 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 883 | 42.12 | temperature | 25 | 10 | < th | dose dependent | sin | 23 | NA |
| 933 | 42.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |