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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0342000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Exostosin-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0135) R2 : 0.00788
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0542 (0.0285) R2dN8 : 0.0102 R2N8 : 0.00788
σ : 0.255
deviance : 29.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.58 0.251 3.11 0.0677 0.164 -0.175 -0.123 -0.0667 -0.0402 0.259 9.638 11 -- --
28.6 0.249 3.11 0.0628 0.17 -0.177 -0.184 -- -0.0391 0.2 9.67 11 -- --
28.6 0.249 3.11 0.0596 0.163 -0.176 -- -0.152 -0.0409 0.353 9.667 11 -- --
28.75 0.25 3.11 0.0744 0.163 -0.175 -- -- -0.0387 0.257 9.67 11 -- --
29.06 0.251 3.11 0.0546 -- -0.0637 -- -0.212 -0.0465 -- 13.76 12 -- --
29.53 0.255 3.11 0.0577 0.0224 -- 0.197 -- -0.0476 11.8 -- -- -- --
29.7 0.255 3.11 0.0655 0.0222 -- -- -- -0.0469 10.9 -- -- -- --
29.22 0.252 3.11 0.0625 -- -0.0758 -- -- -0.0437 -- 15.98 8 -- --
28.91 0.25 3.11 -- 0.156 -0.167 -- -- -0.0453 0.283 9.61 11 -- --
29.73 0.255 3.11 0.065 -- -- -- -- -0.047 -- -- -- -- --
29.81 0.255 3.11 -- 0.0217 -- -- -- -0.0542 10.7 -- -- -- --
29.31 0.252 3.11 -- -- -0.077 -- -- -0.0503 -- 15.97 7 -- --
29.84 0.255 3.11 -- -- -- -- -- -0.0542 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.82 humidity 90.0 30 < th dose dependent rect. 20 1
2 26.83 radiation 10.0 14400 < th dose dependent rect. 21 1
5 26.87 humidity 90.0 30 < th dose independent rect. 20 1
10 26.88 atmosphere 1005.0 30 > th dose independent rect. 20 1
17 26.90 temperature 20.0 30 > th dose independent rect. 20 1
18 26.90 temperature 15.0 30 > th dose dependent rect. 20 1
19 26.90 temperature 25.0 30 > th dose dependent rect. 20 1
20 26.91 wind 5.0 30 < th dose independent rect. 20 1
23 26.91 atmosphere 1000.0 30 > th dose dependent rect. 20 1
29 26.92 wind 1.0 30 > th dose independent rect. 20 1
32 26.92 temperature 10.0 30 > th dose independent rect. 20 1
34 26.92 temperature 10.0 1440 > th dose independent rect. 21 1
37 26.92 temperature 30.0 30 < th dose independent rect. 20 1
38 26.92 temperature 30.0 1440 < th dose independent rect. 21 1
42 26.92 humidity 50.0 30 > th dose independent rect. 20 1
45 26.92 humidity 50.0 1440 > th dose independent rect. 21 1
51 26.92 atmosphere 995.0 30 > th dose independent rect. 20 1
53 26.92 atmosphere 995.0 1440 > th dose independent rect. 21 1
54 26.92 atmosphere 1010.0 30 < th dose independent rect. 20 1
56 26.92 radiation 1.0 30 < th dose independent rect. 20 1
61 26.92 radiation 1.0 1440 < th dose independent rect. 21 1
81 26.92 precipitation 0.1 30 < th dose independent rect. 20 1
82 26.92 temperature 10.0 30 > th dose independent rect. 21 23
83 26.92 temperature 10.0 1440 > th dose independent rect. 22 23
86 26.92 wind 9.0 30 < th dose dependent rect. 20 1
89 26.92 radiation 1.0 30 < th dose dependent rect. 20 1
94 26.92 precipitation 0.1 30 < th dose dependent rect. 20 1
97 26.93 wind 1.0 30 > th dose dependent rect. 20 1
100 26.93 atmosphere 1015.0 30 < th dose dependent rect. 20 1
101 26.94 wind 9.0 10 < th dose independent rect. 21 23
104 26.95 humidity 50.0 30 > th dose dependent rect. 20 1
105 26.96 atmosphere 1000.0 30 > th dose independent rect. 21 23
113 27.03 temperature 30.0 30 < th dose dependent rect. 20 1
153 27.18 precipitation 0.1 30 < th dose independent rect. 21 23
156 27.18 precipitation 0.1 30 < th dose dependent rect. 21 23
158 27.21 temperature 25.0 30 > th dose dependent rect. 20 5
160 27.23 temperature 25.0 30 > th dose dependent rect. 20 8
191 27.55 precipitation 0.1 1440 < th dose independent rect. 21 1
192 27.55 radiation 40.0 1440 < th dose independent rect. 17 15
193 27.55 precipitation 0.1 1440 < th dose dependent rect. 21 1
196 27.61 radiation 10.0 30 < th dose independent rect. 21 23
197 27.62 radiation 40.0 1440 < th dose independent rect. 4 4
199 27.65 radiation 20.0 10 < th dose dependent rect. 21 23
200 27.69 temperature 10.0 30 > th dose dependent rect. 21 23
202 27.71 humidity 50.0 1440 > th dose independent rect. 17 10
204 27.72 humidity 50.0 1440 > th dose independent rect. 17 8
209 27.73 humidity 50.0 1440 > th dose independent rect. 17 1
215 27.74 humidity 50.0 1440 < th dose independent rect. 17 1
236 27.74 humidity 50.0 1440 < th dose dependent rect. 17 1
333 27.76 humidity 50.0 1440 > th dose independent rect. 16 16
335 27.76 wind 7.0 30 < th dose independent rect. 3 17
420 27.82 radiation 40.0 1440 < th dose independent rect. 1 7
452 27.84 atmosphere 995.0 30 > th dose independent rect. 3 17
497 27.87 wind 5.0 30 < th dose independent rect. 20 7
513 27.88 temperature 10.0 30 > th dose dependent rect. 3 17
516 27.90 wind 9.0 10 < th dose dependent rect. 20 7
523 27.95 temperature 20.0 30 > th dose independent rect. 3 17
586 28.01 temperature 25.0 30 > th dose independent rect. 20 4
591 28.01 atmosphere 1015.0 30 < th dose independent rect. 20 7
608 28.02 atmosphere 1005.0 270 > th dose independent rect. 20 1
612 28.02 radiation 10.0 10 < th dose independent rect. 3 17
620 28.02 humidity 50.0 30 > th dose dependent rect. 20 7
636 28.03 humidity 50.0 30 > th dose independent rect. 21 23
652 28.03 radiation 20.0 10 < th dose dependent rect. 3 17
657 28.04 precipitation 0.1 30 < th dose independent rect. 20 7
658 28.04 atmosphere 1010.0 30 < th dose independent rect. 3 17
662 28.04 precipitation 0.1 30 < th dose dependent rect. 20 7
667 28.05 temperature 10.0 30 > th dose independent rect. 20 7
668 28.05 temperature 30.0 30 < th dose independent rect. 20 7
671 28.05 humidity 50.0 30 > th dose independent rect. 20 7
674 28.05 atmosphere 995.0 30 > th dose independent rect. 20 7
676 28.05 radiation 1.0 30 < th dose independent rect. 20 7
681 28.05 temperature 10.0 30 > th dose independent rect. 3 17
685 28.05 radiation 1.0 30 < th dose dependent rect. 20 7
718 28.08 atmosphere 1000.0 10 > th dose independent rect. 1 19
745 28.09 wind 9.0 30 < th dose dependent rect. 3 17
759 28.10 atmosphere 995.0 30 > th dose dependent rect. 20 7
777 28.12 temperature 25.0 30 > th dose independent rect. 20 8
782 28.13 humidity 90.0 270 < th dose independent rect. 20 1
786 28.13 humidity 50.0 1440 < th dose dependent rect. 14 1
795 28.15 atmosphere 1000.0 30 > th dose independent rect. 12 8
800 28.15 humidity 90.0 10 > th dose dependent rect. 23 1
811 28.17 wind 7.0 10 < th dose independent rect. 12 8
815 28.17 precipitation 0.1 30 < th dose independent rect. 3 17
820 28.17 temperature 25.0 720 > th dose dependent rect. 2 6
823 28.17 precipitation 0.1 30 < th dose dependent rect. 3 17
824 28.18 temperature 10.0 1440 > th dose independent rect. 21 7
827 28.18 temperature 30.0 1440 < th dose independent rect. 21 7
832 28.18 humidity 50.0 1440 > th dose independent rect. 21 7
838 28.18 atmosphere 995.0 1440 > th dose independent rect. 21 7
839 28.18 radiation 1.0 1440 < th dose independent rect. 21 7
865 28.18 temperature 10.0 1440 > th dose independent rect. 4 17
870 28.18 radiation 10.0 1440 < th dose dependent rect. 21 7
874 28.18 radiation 30.0 10 < th dose dependent rect. 3 8
878 28.19 atmosphere 1005.0 30 > th dose independent rect. 20 4
879 28.19 temperature 15.0 1440 > th dose independent rect. 21 5
894 28.19 temperature 20.0 270 > th dose independent rect. 24 19
896 28.20 humidity 50.0 4320 > th dose independent rect. 14 1
904 28.20 radiation 10.0 10 < th dose independent rect. 24 20
946 28.23 atmosphere 1005.0 30 > th dose independent rect. 20 7
948 28.23 wind 7.0 10 < th dose independent rect. 1 19
951 28.23 atmosphere 1015.0 14400 > th dose dependent rect. 18 3
955 28.24 wind 1.0 43200 > th dose independent rect. 9 2
991 28.25 temperature 15.0 270 > th dose independent rect. 21 23