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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0341500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0265) R2 : 0.00839
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.11 (0.0558) R2dN8 : 0.0108 R2N8 : 0.00839
σ : 0.499
deviance : 114.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.51 0.427 3.45 -0.192 0.684 -0.0266 -0.195 1.59 -0.188 2.41 70 1411 -- --
87.18 0.435 3.41 0.0549 0.673 0.135 -0.32 -- -0.0972 2.53 72 2635 -- --
82.56 0.423 3.45 -0.191 0.68 -0.0103 -- 1.65 -0.185 2.42 70.4 1335 -- --
85.83 0.432 3.41 0.0382 0.652 0.361 -- -- -0.0994 2.07 67.81 5520 -- --
105.88 0.482 3.41 0.105 -- 0.301 -- -0.214 -0.116 -- 70.03 1132 -- --
88.42 0.441 3.41 0.0503 0.658 -- -0.232 -- -0.118 2.42 -- -- -- --
88.61 0.441 3.41 0.0565 0.658 -- -- -- -0.117 2.46 -- -- -- --
100.52 0.469 3.41 0.115 -- 0.358 -- -- -0.0897 -- 74.02 1826 -- --
85.57 0.431 3.42 -- 0.67 0.418 -- -- -0.117 2.4 68 5565 -- --
114.15 0.499 3.41 0.0844 -- -- -- -- -0.1 -- -- -- -- --
88.7 0.441 3.41 -- 0.659 -- -- -- -0.123 2.46 -- -- -- --
100.87 0.469 3.41 -- -- 0.356 -- -- -0.103 -- 74.02 1826 -- --
114.34 0.499 3.41 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.31 humidity 80.0 270 > th dose dependent rect. 3 3
6 80.85 humidity 90.0 270 < th dose independent rect. 23 1
7 80.95 temperature 15.0 270 > th dose independent rect. 23 1
9 81.00 precipitation 0.1 4320 > th dose independent rect. 24 18
11 81.03 temperature 15.0 30 > th dose independent rect. 9 19
12 81.04 humidity 80.0 270 > th dose independent rect. 3 3
16 81.07 atmosphere 1015.0 270 < th dose dependent rect. 3 2
17 81.08 precipitation 0.1 4320 < th dose independent rect. 24 18
20 81.08 precipitation 0.1 4320 < th dose dependent rect. 24 18
33 81.15 precipitation 0.1 4320 < th dose independent rect. 3 15
36 81.15 precipitation 0.1 4320 < th dose dependent rect. 3 15
41 81.18 temperature 15.0 270 > th dose independent rect. 6 21
45 81.24 radiation 10.0 270 < th dose independent rect. 3 3
57 81.31 radiation 10.0 270 < th dose dependent rect. 3 3
62 81.40 temperature 10.0 270 > th dose dependent rect. 3 3
67 81.50 precipitation 0.1 270 < th dose independent rect. 3 2
68 81.50 humidity 90.0 270 > th dose independent rect. 1 6
69 81.50 precipitation 0.1 270 < th dose dependent rect. 3 2
70 81.51 temperature 15.0 30 > th dose independent rect. 23 5
75 81.53 humidity 90.0 270 > th dose independent rect. 23 8
77 81.54 temperature 15.0 270 > th dose independent rect. 19 8
79 81.55 precipitation 0.1 4320 > th dose independent sin 2 NA
90 81.58 precipitation 0.1 4320 < th dose independent sin 2 NA
91 81.58 wind 9.0 270 < th dose independent rect. 3 2
92 81.58 temperature 10.0 270 > th dose independent rect. 3 2
94 81.58 temperature 30.0 270 < th dose independent rect. 3 2
95 81.58 humidity 50.0 270 > th dose independent rect. 3 2
98 81.58 atmosphere 995.0 270 > th dose independent rect. 3 2
99 81.58 atmosphere 1010.0 270 < th dose independent rect. 3 2
106 81.58 precipitation 0.1 4320 < th dose dependent sin 2 NA
114 81.62 humidity 50.0 90 > th dose dependent rect. 3 5
121 81.65 wind 9.0 270 < th dose independent rect. 6 21
130 81.67 precipitation 0.1 4320 < th dose independent rect. 5 5
131 81.67 precipitation 0.1 4320 < th dose dependent rect. 5 5
148 81.69 radiation 10.0 270 < th dose independent rect. 2 6
169 81.77 humidity 70.0 1440 > th dose independent rect. 10 3
172 81.78 wind 3.0 90 < th dose dependent rect. 4 4
185 81.81 atmosphere 1015.0 90 < th dose dependent rect. 3 6
191 81.83 wind 9.0 270 < th dose dependent rect. 3 3
193 81.84 precipitation 0.1 4320 > th dose dependent rect. 24 19
194 81.86 precipitation 0.1 4320 > th dose dependent sin 3 NA
195 81.86 temperature 10.0 270 > th dose dependent rect. 4 1
203 81.88 precipitation 0.1 4320 < th dose independent rect. 4 9
204 81.88 precipitation 0.1 270 < th dose independent rect. 5 22
205 81.88 precipitation 0.1 4320 < th dose dependent rect. 4 9
206 81.88 precipitation 0.1 270 < th dose dependent rect. 5 22
213 81.91 precipitation 0.1 90 < th dose independent rect. 3 5
217 81.91 wind 9.0 90 < th dose dependent rect. 3 5
218 81.91 precipitation 0.1 90 < th dose dependent rect. 3 5
220 81.92 precipitation 0.1 4320 < th dose independent rect. 7 3
222 81.92 precipitation 0.1 4320 > th dose independent rect. 4 9
225 81.92 precipitation 0.1 4320 < th dose dependent rect. 7 3
245 81.96 radiation 40.0 90 < th dose independent rect. 3 5
249 81.97 humidity 70.0 1440 < th dose independent rect. 10 3
256 81.98 wind 9.0 90 < th dose independent rect. 3 5
257 81.98 temperature 10.0 90 > th dose independent rect. 3 5
259 81.98 temperature 30.0 90 < th dose independent rect. 3 5
260 81.98 humidity 50.0 90 > th dose independent rect. 3 5
262 81.98 atmosphere 995.0 90 > th dose independent rect. 3 5
263 81.98 atmosphere 1015.0 90 < th dose independent rect. 3 5
270 81.98 precipitation 0.1 4320 > th dose dependent rect. 4 9
275 82.00 wind 9.0 90 < th dose independent rect. 8 19
297 82.03 humidity 50.0 90 > th dose independent rect. 8 19
351 82.14 precipitation 0.1 4320 > th dose independent rect. 5 5
391 82.18 atmosphere 995.0 270 > th dose independent rect. 6 21
400 82.19 humidity 90.0 4320 > th dose dependent rect. 18 2
405 82.20 humidity 50.0 4320 > th dose independent rect. 4 6
406 82.20 humidity 90.0 270 < th dose independent rect. 20 6
408 82.20 precipitation 0.1 90 < th dose independent rect. 8 19
415 82.20 precipitation 0.1 90 < th dose dependent rect. 8 19
436 82.23 precipitation 0.1 4320 > th dose dependent rect. 5 5
450 82.25 radiation 40.0 90 < th dose dependent rect. 3 5
461 82.27 humidity 70.0 1440 < th dose independent rect. 9 8
489 82.28 humidity 90.0 270 < th dose independent rect. 20 11
493 82.28 humidity 70.0 1440 > th dose independent rect. 16 22
502 82.30 atmosphere 1010.0 30 < th dose independent rect. 23 5
504 82.30 wind 1.0 4320 < th dose dependent rect. 18 2
516 82.31 precipitation 0.1 4320 > th dose dependent rect. 15 22
520 82.32 precipitation 0.1 4320 < th dose independent rect. 14 5
522 82.32 humidity 70.0 1440 > th dose independent rect. 9 9
526 82.32 precipitation 0.1 4320 < th dose dependent rect. 14 5
541 82.34 precipitation 0.1 4320 > th dose independent rect. 14 5
646 82.39 atmosphere 995.0 90 > th dose independent rect. 8 19
669 82.40 humidity 70.0 1440 > th dose independent rect. 9 20
698 82.43 humidity 70.0 270 > th dose dependent rect. 18 13
701 82.44 humidity 70.0 1440 > th dose independent sin 1 NA
732 82.45 precipitation 0.1 4320 < th dose independent rect. 15 22
740 82.45 precipitation 0.1 4320 < th dose dependent rect. 15 22
743 82.46 atmosphere 1015.0 90 < th dose independent rect. 8 19
756 82.47 precipitation 0.1 4320 > th dose independent rect. 7 3
762 82.47 precipitation 0.1 4320 > th dose independent rect. 15 22
766 82.47 precipitation 0.1 4320 > th dose dependent rect. 7 3
780 82.48 humidity 50.0 270 > th dose independent rect. 6 21
787 82.48 humidity 80.0 270 > th dose dependent rect. 20 11
802 82.50 wind 7.0 90 > th dose independent rect. 4 5
829 82.52 temperature 10.0 1440 > th dose independent rect. 4 6
834 82.52 atmosphere 995.0 1440 > th dose independent rect. 4 6
835 82.52 atmosphere 1015.0 1440 < th dose independent rect. 4 6
836 82.52 wind 7.0 90 > th dose independent rect. 1 8
840 82.52 temperature 10.0 1440 > th dose independent rect. 10 18
880 82.54 humidity 90.0 270 < th dose independent rect. 21 16
919 82.55 precipitation 0.1 4320 > th dose dependent rect. 15 15
954 82.56 humidity 70.0 1440 < th dose independent rect. 19 22