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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0341400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.38 (0.0404) R2 : 0.442
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.58 (0.102) R2dC : 0.303 R2C : 0.223
β3 : -2.06 (0.184) R2dE : 0.183 R2E : 0.133
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.2 (0.0899) R2dN8 : 0.00906 R2N8 : 0.0306
σ : 0.747
deviance : 257.13
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_____
C
peak time of C : 15.6
E
wheather : temperature
threshold : 25.08
memory length : 1114
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
244.63 0.735 4.31 0.295 1.58 -2.58 0.608 -3.29 0.282 15.6 24.19 1101 -- --
257.02 0.747 4.37 -0.228 1.52 -2.09 0.254 -- 0.193 15.3 25.08 1010 -- --
245.7 0.73 4.32 0.269 1.58 -2.56 -- -3.07 0.276 15.5 24.22 1107 -- --
256.09 0.745 4.4 -0.258 1.54 -2.17 -- -- 0.14 15.5 25 1097 -- --
341.17 0.865 4.35 0.171 -- -2.27 -- -1.96 0.196 -- 25.83 1778 -- --
322.34 0.842 4.29 0.4 1.42 -- 0.438 -- 0.612 16 -- -- -- --
322.88 0.841 4.29 0.406 1.42 -- -- -- 0.614 16 -- -- -- --
305.36 0.817 4.4 -0.224 -- -2.52 -- -- 0.0622 -- 28.16 1802 -- --
257.13 0.747 4.38 -- 1.58 -2.06 -- -- 0.2 15.6 25.08 1114 -- --
433.95 0.973 4.28 0.348 -- -- -- -- 0.576 -- -- -- -- --
327.23 0.846 4.3 -- 1.42 -- -- -- 0.569 16 -- -- -- --
293.72 0.801 4.39 -- -- -2.56 -- -- 0.111 -- 29.42 1812 -- --
437.14 0.976 4.29 -- -- -- -- -- 0.538 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.40 temperature 10 720 > th dose dependent rect. 21 14
2 243.93 temperature 10 270 > th dose dependent rect. 4 23
4 245.12 temperature 30 270 < th dose dependent rect. 24 23
5 245.15 temperature 25 1440 < th dose dependent rect. 20 6
31 246.25 temperature 10 720 > th dose dependent rect. 21 16
39 246.46 temperature 10 720 > th dose dependent sin 6 NA
59 246.82 temperature 25 1440 < th dose dependent sin 12 NA
84 247.34 temperature 10 720 > th dose dependent rect. 23 10
129 247.88 temperature 30 720 < th dose dependent sin 6 NA
164 248.34 temperature 20 90 > th dose dependent rect. 7 21
171 248.40 temperature 15 1440 > th dose dependent rect. 23 3
173 248.43 temperature 10 1440 > th dose dependent rect. 24 1
181 248.48 temperature 20 10 > th dose dependent rect. 7 23
247 248.96 temperature 25 1440 < th dose dependent rect. 11 20
264 249.06 temperature 30 720 < th dose dependent rect. 1 12
299 249.20 temperature 15 270 > th dose dependent rect. 17 23
308 249.27 temperature 25 720 < th dose dependent rect. 2 19
321 249.38 temperature 20 10 > th dose dependent rect. 23 23
416 249.88 temperature 25 1440 < th dose dependent no NA NA
448 250.13 temperature 25 1440 < th dose dependent rect. 5 23
451 250.15 temperature 10 720 > th dose dependent rect. 4 7
468 250.26 temperature 30 720 < th dose dependent rect. 2 9
477 250.29 temperature 25 1440 < th dose dependent rect. 24 23
546 250.71 temperature 20 90 > th dose dependent rect. 7 17
595 250.98 temperature 25 720 < th dose dependent sin 2 NA
701 251.55 temperature 20 1440 > th dose independent rect. 3 1
754 251.79 temperature 20 10 > th dose dependent rect. 21 23
764 251.85 temperature 15 90 > th dose dependent no NA NA
803 252.08 temperature 30 270 < th dose dependent no NA NA
820 252.17 temperature 20 4320 > th dose independent rect. 22 1
828 252.24 temperature 20 720 > th dose dependent rect. 4 5
884 252.60 temperature 20 10 > th dose dependent rect. 7 15
917 252.74 temperature 30 30 < th dose dependent rect. 9 23
921 252.76 temperature 20 1440 > th dose independent rect. 5 1
941 252.86 temperature 20 1440 > th dose independent rect. 3 4
942 252.86 temperature 20 1440 < th dose independent rect. 3 4
969 252.97 temperature 30 90 < th dose dependent rect. 13 23
994 253.11 temperature 30 270 < th dose dependent rect. 8 23
995 253.12 temperature 20 1440 < th dose independent rect. 5 1
999 253.16 temperature 15 10 > th dose dependent no NA NA