Os06g0340600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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Os06g0340600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.77 | 0.273 | 13.9 | 0.536 | 0.912 | -0.401 | -0.585 | -0.906 | 0.17 | 15.4 | 26.6 | 1443 | -- | -- |
| 33.99 | 0.272 | 13.9 | 0.771 | 0.91 | -0.491 | -0.602 | -- | 0.228 | 15.4 | 26.3 | 1432 | -- | -- |
| 34.78 | 0.275 | 13.9 | 0.565 | 0.91 | -0.411 | -- | -0.759 | 0.175 | 15.5 | 26.59 | 1446 | -- | -- |
| 34.93 | 0.275 | 13.9 | 0.763 | 0.918 | -0.491 | -- | -- | 0.226 | 15.6 | 26.28 | 1443 | -- | -- |
| 77.54 | 0.41 | 13.9 | 0.707 | -- | -0.693 | -- | -0.0856 | 0.245 | -- | 25.56 | 1231 | -- | -- |
| 45.6 | 0.317 | 13.9 | 0.599 | 0.959 | -- | -0.468 | -- | 0.203 | 15.4 | -- | -- | -- | -- |
| 46.26 | 0.319 | 13.9 | 0.591 | 0.96 | -- | -- | -- | 0.2 | 15.5 | -- | -- | -- | -- |
| 76.89 | 0.408 | 13.9 | 0.792 | -- | -0.758 | -- | -- | 0.276 | -- | 24.6 | 1224 | -- | -- |
| 49.1 | 0.326 | 13.9 | -- | 0.906 | -0.332 | -- | -- | 0.123 | 15.5 | 27.8 | 1428 | -- | -- |
| 97.81 | 0.462 | 13.9 | 0.55 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 55.46 | 0.348 | 13.9 | -- | 0.948 | -- | -- | -- | 0.135 | 15.5 | -- | -- | -- | -- |
| 92.27 | 0.447 | 13.9 | -- | -- | -0.584 | -- | -- | 0.163 | -- | 24.91 | 1219 | -- | -- |
| 105.8 | 0.48 | 13.9 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.42 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 15 | 30.84 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 17 | 30.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 18 | 30.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 22 | 30.92 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 30 | 31.55 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 63 | 32.01 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 66 | 32.09 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 108 | 32.42 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 116 | 32.45 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 118 | 32.45 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 171 | 32.61 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 173 | 32.62 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 195 | 32.66 | temperature | 30 | 14400 | > th | dose dependent | sin | 10 | NA |
| 199 | 32.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 242 | 32.77 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 399 | 32.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 443 | 32.98 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 475 | 32.99 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 476 | 32.99 | temperature | 30 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 583 | 33.00 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 589 | 33.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 689 | 33.01 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 695 | 33.01 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 810 | 33.02 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 928 | 33.06 | temperature | 30 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 988 | 33.08 | temperature | 30 | 14400 | < th | dose independent | sin | 0 | NA |
| 999 | 33.09 | temperature | 30 | 14400 | > th | dose independent | sin | 23 | NA |