FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0337100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.75 (0.101) R2 : 0.205
β1 : 0.661 (0.328) R2dD : 0.0232 R2D : -0.215
β2 : -- (--) R2dC : -- R2C : --
β3 : 7.24 (1.5) R2dE : 2.15 R2E : -1.05
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.1 (3.32) R2dD*E : 1.12 R2D*E : -1.79
γ1 : -0.183 (0.115) R2dN8 : 0.00679 R2N8 : -0.0802
σ : 0.944
deviance : 410.63
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.072
memory length : 4172
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.01
open length of G : 1.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
400.05 0.94 3.75 0.646 0.28 7.19 1.59 12.1 -0.188 5.2 1.051 4186 8.02 1.02
645.6 1.18 3.71 0.721 0.355 7.26 1.66 -- -0.114 5.12 0.7527 7169 7.64 1.49
405.97 0.938 3.75 0.667 0.285 7.27 -- 12.1 -0.179 5.3 1.074 4167 8.01 1.03
464.61 1.01 3.49 -1.17 0.264 1.1 -- -- -0.513 5.82 1.254 8027 7.89 1.57
410.63 0.944 3.75 0.661 -- 7.24 -- 12.1 -0.183 -- 1.072 4172 8.01 1.03
457.84 1 3.49 -1.16 0.258 -- 1.8 -- -0.507 5.36 -- -- -- --
465.81 1.01 3.49 -1.16 0.273 -- -- -- -0.515 5.88 -- -- -- --
445.31 0.983 3.48 -0.627 -- 1.22 -- -- -0.426 -- 1.133 5306 7.92 1.64
426.05 0.961 3.49 -- 0.271 1.62 -- -- -0.224 5.77 0.9215 11056 7.51 1.7
469.67 1.01 3.5 -1.15 -- -- -- -- -0.509 -- -- -- -- --
501.12 1.05 3.46 -- 0.256 -- -- -- -0.386 6.1 -- -- -- --
418.65 0.953 3.49 -- -- 1.97 -- -- -0.228 -- 0.9302 11050 7.55 0.75
504.51 1.05 3.47 -- -- -- -- -- -0.381 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 409.75 radiation 30.0 14400 > th dose independent rect. 16 16
2 410.11 radiation 30.0 14400 > th dose independent rect. 7 1
17 411.09 radiation 1.0 4320 < th dose independent rect. 8 1
18 411.09 radiation 1.0 4320 < th dose dependent rect. 8 1
19 411.50 radiation 30.0 14400 > th dose dependent rect. 16 16
20 411.54 radiation 40.0 14400 < th dose independent rect. 19 13
24 411.73 radiation 40.0 14400 < th dose independent rect. 7 1
25 411.76 radiation 40.0 14400 < th dose independent rect. 1 7
32 411.99 radiation 30.0 14400 > th dose dependent rect. 7 1
50 412.35 humidity 70.0 14400 < th dose dependent rect. 19 13
67 413.71 radiation 1.0 4320 > th dose independent rect. 8 1
68 413.80 precipitation 0.1 4320 < th dose independent rect. 13 1
69 413.80 precipitation 0.1 4320 < th dose dependent rect. 13 1
70 414.10 radiation 1.0 4320 < th dose independent rect. 18 1
75 414.42 radiation 1.0 4320 < th dose independent rect. 18 7
77 414.42 humidity 70.0 14400 < th dose dependent rect. 19 1
99 414.96 precipitation 0.1 4320 > th dose independent rect. 13 1
102 415.41 wind 9.0 43200 > th dose dependent rect. 22 1
104 415.75 humidity 60.0 14400 < th dose independent rect. 18 2
105 415.83 radiation 1.0 4320 < th dose dependent rect. 7 6
129 416.44 temperature 25.0 1440 < th dose dependent rect. 16 11
131 416.45 humidity 60.0 43200 > th dose independent rect. 23 1
141 416.66 temperature 25.0 1440 < th dose dependent rect. 19 3
148 416.83 humidity 60.0 14400 > th dose independent rect. 18 2
152 416.91 temperature 20.0 1440 < th dose independent rect. 21 1
156 416.99 radiation 1.0 4320 < th dose dependent rect. 18 19
171 417.36 radiation 1.0 4320 < th dose independent rect. 7 6
173 417.39 radiation 1.0 4320 > th dose independent rect. 7 6
179 417.49 humidity 60.0 14400 < th dose dependent rect. 17 16
182 417.53 radiation 1.0 14400 > th dose dependent rect. 7 1
194 417.68 radiation 40.0 14400 < th dose dependent rect. 7 1
197 417.69 humidity 60.0 43200 < th dose dependent rect. 22 3
204 417.73 temperature 25.0 1440 < th dose dependent sin 14 NA
212 417.82 radiation 1.0 4320 < th dose dependent rect. 18 16
216 417.87 radiation 1.0 4320 > th dose independent rect. 18 1
250 418.07 precipitation 0.1 43200 < th dose independent rect. 19 1
255 418.07 precipitation 0.1 43200 < th dose dependent rect. 19 1
260 418.11 precipitation 0.1 43200 > th dose independent rect. 19 1
263 418.12 temperature 20.0 1440 > th dose independent rect. 21 1
271 418.22 humidity 60.0 14400 > th dose independent rect. 18 12
282 418.24 humidity 60.0 14400 > th dose independent rect. 18 9
286 418.26 humidity 50.0 43200 < th dose dependent rect. 20 8
291 418.27 radiation 10.0 1440 < th dose independent rect. 17 16
308 418.32 temperature 20.0 1440 < th dose independent rect. 12 18
314 418.40 temperature 20.0 1440 > th dose independent rect. 12 19
329 418.41 humidity 60.0 43200 < th dose independent rect. 22 2
333 418.45 temperature 10.0 1440 > th dose dependent rect. 16 11
342 418.52 humidity 90.0 14400 > th dose dependent rect. 1 1
353 418.58 radiation 1.0 4320 < th dose dependent rect. 18 1
365 418.64 precipitation 0.1 4320 > th dose dependent rect. 13 1
385 418.77 radiation 1.0 14400 < th dose dependent rect. 18 11
397 418.85 humidity 60.0 14400 < th dose independent rect. 18 15
405 418.89 wind 9.0 43200 > th dose dependent rect. 19 4
418 418.96 temperature 20.0 1440 < th dose dependent rect. 2 1
428 419.02 wind 9.0 43200 < th dose independent rect. 19 2
436 419.06 wind 9.0 43200 > th dose independent rect. 19 2
439 419.07 temperature 10.0 1440 > th dose dependent rect. 21 1
507 419.37 temperature 20.0 1440 > th dose independent sin 15 NA
508 419.37 temperature 10.0 1440 > th dose dependent rect. 19 3
520 419.41 temperature 20.0 1440 < th dose independent sin 15 NA
539 419.51 precipitation 0.1 14400 > th dose dependent rect. 18 1
544 419.52 radiation 20.0 14400 < th dose independent rect. 17 1
563 419.59 temperature 10.0 1440 > th dose dependent sin 14 NA
616 419.77 wind 7.0 43200 > th dose dependent rect. 24 1
617 419.77 radiation 1.0 4320 < th dose dependent rect. 4 9
634 419.83 radiation 1.0 4320 < th dose dependent rect. 24 13
661 419.88 temperature 20.0 1440 > th dose independent rect. 18 7
679 419.93 temperature 20.0 1440 > th dose independent rect. 15 11
680 419.93 precipitation 0.1 14400 > th dose dependent rect. 16 2
687 419.95 temperature 20.0 1440 < th dose independent rect. 18 7
688 419.95 temperature 20.0 1440 < th dose independent rect. 15 11
712 420.00 radiation 20.0 14400 < th dose independent rect. 17 4
713 420.00 wind 9.0 43200 > th dose independent rect. 18 5
719 420.01 precipitation 0.1 14400 < th dose independent rect. 16 1
721 420.01 precipitation 0.1 14400 < th dose dependent rect. 16 1
745 420.07 radiation 10.0 1440 < th dose independent sin 11 NA
806 420.14 radiation 20.0 14400 < th dose independent rect. 17 10
849 420.20 wind 9.0 43200 > th dose dependent rect. 19 1
863 420.24 wind 9.0 43200 < th dose independent rect. 18 5
934 420.41 precipitation 0.1 14400 > th dose independent rect. 16 1
957 420.45 radiation 40.0 14400 < th dose dependent rect. 2 6
965 420.45 radiation 40.0 14400 < th dose dependent rect. 20 12
972 420.47 temperature 10.0 1440 > th dose dependent rect. 23 4
981 420.48 radiation 40.0 14400 < th dose dependent rect. 23 9