Os06g0335900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xyloglucan endotransglycosylase XET2 (Fragment).
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Os06g0335900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xyloglucan endotransglycosylase XET2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.58 | 0.717 | 3.5 | -0.641 | 0.883 | 1.37 | -0.372 | -0.883 | 0.591 | 22.5 | 57.06 | 795 | -- | -- |
| 231.37 | 0.708 | 3.5 | -0.705 | 0.875 | 1.36 | -0.146 | -- | 0.591 | 23 | 59.09 | 887 | -- | -- |
| 231.49 | 0.709 | 3.49 | -0.563 | 0.87 | 1.4 | -- | -0.725 | 0.579 | 23.5 | 48.01 | 943 | -- | -- |
| 230.94 | 0.708 | 3.49 | -0.698 | 0.837 | 1.32 | -- | -- | 0.597 | 23.6 | 57.98 | 973 | -- | -- |
| 245.96 | 0.73 | 3.47 | -0.663 | -- | 1.04 | -- | -0.528 | 0.635 | -- | 60.7 | 1579 | -- | -- |
| 257.69 | 0.753 | 3.5 | -0.754 | 0.397 | -- | -0.425 | -- | 0.533 | 1.07 | -- | -- | -- | -- |
| 258.4 | 0.753 | 3.5 | -0.738 | 0.397 | -- | -- | -- | 0.536 | 0.805 | -- | -- | -- | -- |
| 246.14 | 0.731 | 3.47 | -0.724 | -- | 1.01 | -- | -- | 0.62 | -- | 61.21 | 1581 | -- | -- |
| 243.33 | 0.727 | 3.49 | -- | 0.87 | 1.47 | -- | -- | 0.629 | 23.6 | 49.1 | 979 | -- | -- |
| 268.25 | 0.765 | 3.49 | -0.724 | -- | -- | -- | -- | 0.543 | -- | -- | -- | -- | -- |
| 272.77 | 0.773 | 3.48 | -- | 0.386 | -- | -- | -- | 0.618 | 0.719 | -- | -- | -- | -- |
| 259.41 | 0.75 | 3.46 | -- | -- | 0.935 | -- | -- | 0.632 | -- | 49.02 | 1581 | -- | -- |
| 282.07 | 0.784 | 3.47 | -- | -- | -- | -- | -- | 0.624 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 217.07 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 219.06 | radiation | 10.0 | 720 | < th | dose independent | rect. | 15 | 4 |
| 3 | 219.12 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 7 | 221.35 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 12 | 222.30 | radiation | 10.0 | 720 | < th | dose independent | rect. | 15 | 12 |
| 15 | 222.71 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 26 | 223.41 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 8 | 20 |
| 30 | 223.60 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 13 |
| 44 | 224.35 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 2 |
| 51 | 224.63 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 77 | 225.75 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 88 | 226.15 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 102 | 226.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 107 | 226.78 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 120 | 227.06 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 137 | 227.42 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 22 |
| 138 | 227.42 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 148 | 227.70 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 152 | 227.78 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 18 |
| 153 | 227.78 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 154 | 227.79 | humidity | 60.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 156 | 227.80 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 159 | 227.87 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 181 | 228.08 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 194 | 228.28 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 17 |
| 195 | 228.28 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 209 | 228.41 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 213 | 228.43 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 20 |
| 233 | 228.60 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 238 | 228.64 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 242 | 228.69 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 247 | 228.75 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 12 |
| 267 | 228.96 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 9 |
| 268 | 228.96 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 310 | 229.30 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 9 |
| 312 | 229.31 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 316 | 229.34 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 9 |
| 359 | 229.60 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 10 |
| 385 | 229.79 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 387 | 229.79 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 393 | 229.84 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 443 | 230.14 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 451 | 230.21 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 10 | 22 |
| 454 | 230.21 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 514 | 230.53 | humidity | 90.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 535 | 230.64 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 10 | 15 |
| 537 | 230.64 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 542 | 230.67 | humidity | 80.0 | 720 | < th | dose independent | rect. | 13 | 2 |
| 582 | 230.91 | wind | 1.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 629 | 231.09 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 649 | 231.24 | humidity | 80.0 | 720 | > th | dose independent | sin | 20 | NA |
| 697 | 231.51 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 727 | 231.72 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 766 | 231.86 | humidity | 70.0 | 720 | < th | dose independent | rect. | 13 | 19 |
| 800 | 232.02 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 834 | 232.17 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 13 |
| 835 | 232.17 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 837 | 232.19 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 2 | 15 |
| 838 | 232.19 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 2 | 15 |
| 911 | 232.45 | humidity | 90.0 | 30 | < th | dose independent | rect. | 14 | 19 |
| 925 | 232.52 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 19 |
| 984 | 232.70 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 21 |