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Os06g0334600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.95 (0.0201) R2 : 0.464
β1 : -1.46 (0.0735) R2dD : 0.479 R2D : 0.456
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.1 (0.0429) R2dN8 : 0.00864 R2N8 : -0.0149
σ : 0.377
deviance : 65.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.19 0.312 9.92 -1.3 0.41 -1.41 -0.367 -3.44 -0.121 20.7 0.3746 1417 -- --
49.2 0.327 9.95 -1.35 0.356 -0.529 -0.178 -- -0.0772 20.5 1.84 1327 -- --
44.58 0.311 9.92 -1.31 0.391 -1.37 -- -3.28 -0.123 20.7 0.35 1410 -- --
47.49 0.321 9.97 -1.6 0.192 -0.799 -- -- -0.17 20.5 1.029 1267 -- --
47.21 0.32 9.94 -1.44 -- -1.31 -- -1.97 -0.137 -- 0.5892 1305 -- --
51.79 0.337 9.96 -1.46 0.476 -- -0.0627 -- -0.0986 21.3 -- -- -- --
51.81 0.337 9.96 -1.46 0.476 -- -- -- -0.0986 21.4 -- -- -- --
47.74 0.322 9.96 -1.6 -- -0.932 -- -- -0.17 -- 1.07 1189 -- --
106.88 0.482 9.94 -- 0.454 -0.23 -- -- 0.0209 20.9 10.01 1384 -- --
65.05 0.377 9.95 -1.46 -- -- -- -- -0.1 -- -- -- -- --
108.06 0.486 9.93 -- 0.476 -- -- -- 0.0641 21.1 -- -- -- --
110.17 0.489 9.94 -- -- -0.685 -- -- -0.0269 -- 9.396 1134 -- --
121.15 0.514 9.91 -- -- -- -- -- 0.0613 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.24 radiation 10.0 1440 < th dose independent rect. 16 14
2 43.57 radiation 10.0 1440 < th dose independent rect. 16 2
3 43.57 radiation 10.0 1440 < th dose independent rect. 16 4
9 43.60 radiation 10.0 1440 < th dose independent rect. 16 9
15 43.81 temperature 20.0 720 > th dose dependent rect. 14 10
26 44.20 temperature 20.0 720 > th dose dependent rect. 16 3
44 44.48 temperature 20.0 90 > th dose dependent sin 11 NA
49 44.51 radiation 1.0 14400 > th dose independent rect. 18 1
72 44.60 radiation 10.0 1440 > th dose independent rect. 16 1
92 44.63 temperature 20.0 720 > th dose dependent sin 16 NA
94 44.64 temperature 25.0 720 > th dose independent rect. 14 8
98 44.64 temperature 20.0 270 > th dose dependent rect. 16 16
99 44.65 radiation 20.0 1440 < th dose dependent rect. 16 14
102 44.68 radiation 20.0 1440 < th dose dependent rect. 16 4
104 44.69 temperature 25.0 720 < th dose independent rect. 19 2
111 44.70 radiation 20.0 1440 < th dose dependent rect. 16 6
112 44.70 radiation 20.0 1440 < th dose dependent rect. 16 9
113 44.70 radiation 1.0 1440 < th dose dependent rect. 18 12
120 44.71 radiation 1.0 1440 > th dose dependent rect. 16 13
126 44.73 temperature 25.0 720 > th dose independent rect. 16 5
128 44.73 radiation 1.0 1440 > th dose dependent rect. 16 3
130 44.73 radiation 40.0 1440 < th dose dependent rect. 16 4
162 44.77 radiation 1.0 14400 < th dose independent rect. 18 1
178 44.78 radiation 1.0 14400 < th dose independent rect. 18 7
192 44.80 temperature 30.0 720 < th dose dependent rect. 19 2
221 44.84 temperature 25.0 720 > th dose independent rect. 16 3
225 44.85 precipitation 0.1 43200 > th dose dependent rect. 17 2
239 44.88 radiation 1.0 1440 < th dose dependent rect. 8 22
248 44.91 temperature 25.0 720 < th dose independent rect. 17 5
267 44.96 radiation 1.0 14400 < th dose dependent rect. 18 1
281 44.97 radiation 1.0 14400 < th dose dependent rect. 18 11
292 44.99 radiation 10.0 1440 < th dose independent sin 13 NA
304 45.01 radiation 1.0 14400 < th dose independent rect. 8 11
353 45.07 precipitation 0.1 43200 > th dose independent rect. 17 2
354 45.07 precipitation 0.1 43200 < th dose independent rect. 17 2
355 45.07 precipitation 0.1 43200 < th dose dependent rect. 17 2
360 45.07 radiation 1.0 14400 < th dose dependent rect. 8 21
364 45.08 radiation 1.0 1440 < th dose dependent rect. 18 1
366 45.08 radiation 1.0 14400 < th dose dependent rect. 8 11
441 45.12 radiation 1.0 14400 < th dose independent sin 18 NA
467 45.12 radiation 1.0 1440 < th dose dependent rect. 18 7
482 45.13 radiation 1.0 14400 < th dose dependent sin 18 NA
513 45.14 radiation 1.0 14400 > th dose independent rect. 8 11
540 45.14 radiation 1.0 14400 < th dose dependent rect. 16 13
558 45.15 radiation 1.0 1440 < th dose dependent sin 13 NA
561 45.15 radiation 1.0 14400 < th dose dependent rect. 16 3
565 45.15 radiation 1.0 14400 < th dose dependent rect. 16 6
587 45.16 radiation 1.0 1440 < th dose dependent rect. 18 10
593 45.17 humidity 90.0 43200 > th dose independent rect. 21 2
648 45.19 atmosphere 1010.0 4320 < th dose independent rect. 18 2
651 45.19 radiation 1.0 14400 < th dose independent rect. 16 3
688 45.20 radiation 1.0 14400 < th dose dependent rect. 18 23
726 45.22 atmosphere 1010.0 4320 > th dose independent rect. 19 1
763 45.23 radiation 10.0 1440 < th dose independent rect. 16 20
770 45.23 radiation 1.0 14400 < th dose dependent rect. 18 21
772 45.24 radiation 1.0 14400 > th dose independent sin 17 NA
886 45.29 radiation 1.0 14400 < th dose dependent rect. 16 23
899 45.30 radiation 1.0 14400 < th dose dependent no NA NA
907 45.30 radiation 1.0 14400 < th dose dependent rect. 4 15