Os06g0334400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cdk-activating kinase 1At (Cdk-activating kinase CAK1At).
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Os06g0334400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cdk-activating kinase 1At (Cdk-activating kinase CAK1At).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.41 | 0.347 | 11.7 | 0.622 | 1 | 0.75 | 0.161 | -0.873 | 0.692 | 22.8 | 66.68 | 36 | -- | -- |
| 56.12 | 0.352 | 11.7 | 0.57 | 0.967 | 0.731 | -0.29 | -- | 0.686 | 22.9 | 66.1 | 30 | -- | -- |
| 54.43 | 0.344 | 11.7 | 0.613 | 0.99 | 0.765 | -- | -0.762 | 0.695 | 22.7 | 66.34 | 28 | -- | -- |
| 56.46 | 0.352 | 11.7 | 0.582 | 0.969 | 0.732 | -- | -- | 0.687 | 22.8 | 66 | 25 | -- | -- |
| 96.92 | 0.461 | 11.6 | 0.612 | -- | 1.28 | -- | -0.82 | 0.73 | -- | 65 | 9 | -- | -- |
| 68.21 | 0.387 | 11.7 | 0.576 | 1.39 | -- | -0.208 | -- | 0.625 | 0.136 | -- | -- | -- | -- |
| 68.39 | 0.387 | 11.7 | 0.584 | 1.39 | -- | -- | -- | 0.626 | 0.129 | -- | -- | -- | -- |
| 99.27 | 0.466 | 11.6 | 0.582 | -- | 1.26 | -- | -- | 0.723 | -- | 64.97 | 5 | -- | -- |
| 65.37 | 0.379 | 11.7 | -- | 0.972 | 0.738 | -- | -- | 0.621 | 22.9 | 65.62 | 25 | -- | -- |
| 190.1 | 0.644 | 11.6 | 0.629 | -- | -- | -- | -- | 0.647 | -- | -- | -- | -- | -- |
| 77.39 | 0.412 | 11.7 | -- | 1.4 | -- | -- | -- | 0.561 | 0.152 | -- | -- | -- | -- |
| 108.18 | 0.484 | 11.6 | -- | -- | 1.28 | -- | -- | 0.652 | -- | 64.37 | 2 | -- | -- |
| 200.52 | 0.661 | 11.7 | -- | -- | -- | -- | -- | 0.577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.75 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 50.47 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 3 | 50.51 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 4 | 50.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 5 | 50.80 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 6 | 50.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 7 | 50.92 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 9 | 50.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 50 | 51.93 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 79 | 52.40 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 82 | 52.43 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 133 | 53.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 138 | 53.15 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 181 | 53.54 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 217 | 53.77 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 247 | 53.98 | humidity | 70 | 30 | > th | dose dependent | sin | 23 | NA |
| 281 | 54.12 | humidity | 50 | 1440 | > th | dose dependent | sin | 3 | NA |
| 305 | 54.19 | humidity | 70 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 332 | 54.29 | humidity | 80 | 10 | > th | dose independent | sin | 0 | NA |
| 335 | 54.29 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 351 | 54.40 | humidity | 60 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 392 | 54.63 | humidity | 80 | 10 | < th | dose independent | sin | 0 | NA |
| 419 | 54.72 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 422 | 54.73 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 17 |
| 423 | 54.73 | humidity | 60 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 479 | 54.89 | humidity | 60 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 481 | 54.91 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 15 |
| 482 | 54.91 | humidity | 70 | 30 | > th | dose dependent | no | NA | NA |
| 483 | 54.91 | humidity | 70 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 493 | 54.94 | humidity | 80 | 10 | < th | dose independent | rect. | 22 | 20 |
| 525 | 55.00 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 532 | 55.00 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 21 |
| 536 | 55.02 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 11 |
| 596 | 55.16 | humidity | 80 | 10 | > th | dose independent | rect. | 7 | 13 |
| 598 | 55.16 | humidity | 70 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 645 | 55.26 | humidity | 70 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 671 | 55.33 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 758 | 55.51 | humidity | 70 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 804 | 55.57 | humidity | 70 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 843 | 55.64 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 858 | 55.65 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 883 | 55.69 | humidity | 70 | 720 | > th | dose dependent | rect. | 2 | 20 |
| 906 | 55.73 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 22 |
| 967 | 55.80 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 23 |