Os06g0332800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Bundle sheath defective protein 2.
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Os06g0332800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Bundle sheath defective protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.53 | 0.422 | 10.5 | 1.78 | 0.959 | -1.96 | 0.0318 | -8.44 | -0.36 | 20.8 | 0.6508 | 1455 | -- | -- |
| 101.81 | 0.47 | 10.6 | 0.99 | 0.827 | -0.735 | -0.27 | -- | -0.505 | 21.2 | 24.39 | 3407 | -- | -- |
| 80.5 | 0.418 | 10.5 | 1.79 | 0.954 | -2.01 | -- | -8.66 | -0.358 | 20.8 | 0.6254 | 1453 | -- | -- |
| 97.23 | 0.459 | 10.7 | 0.951 | 0.899 | -0.794 | -- | -- | -0.6 | 21.7 | 85.29 | 1798 | -- | -- |
| 116.91 | 0.504 | 10.5 | 1.64 | -- | -2.19 | -- | -8.09 | -0.418 | -- | 0.57 | 1378 | -- | -- |
| 110.18 | 0.492 | 10.6 | 0.973 | 0.917 | -- | -0.22 | -- | -0.462 | 20.9 | -- | -- | -- | -- |
| 110.34 | 0.492 | 10.6 | 0.98 | 0.917 | -- | -- | -- | -0.462 | 20.9 | -- | -- | -- | -- |
| 105.99 | 0.479 | 10.7 | 0.931 | -- | -1.36 | -- | -- | -0.643 | -- | 11.99 | 1080 | -- | -- |
| 119.23 | 0.509 | 10.7 | -- | 0.931 | -0.9 | -- | -- | -0.721 | 21.9 | 268.1 | 1798 | -- | -- |
| 158.32 | 0.588 | 10.6 | 0.98 | -- | -- | -- | -- | -0.469 | -- | -- | -- | -- | -- |
| 135.65 | 0.545 | 10.7 | -- | 0.915 | -- | -- | -- | -0.571 | 21 | -- | -- | -- | -- |
| 125.61 | 0.522 | 10.7 | -- | -- | -1.4 | -- | -- | -0.739 | -- | 17.33 | 1052 | -- | -- |
| 183.64 | 0.633 | 10.6 | -- | -- | -- | -- | -- | -0.577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.26 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 2 | 76.34 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 6 | 5 |
| 5 | 76.44 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 7 | 76.45 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 50 | 76.86 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 80 | 77.10 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 159 | 77.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 222 | 77.66 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 15 |
| 341 | 77.96 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 417 | 78.11 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 445 | 78.14 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 453 | 78.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 467 | 78.17 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 605 | 78.38 | temperature | 25.0 | 14400 | < th | dose dependent | no | NA | NA |
| 648 | 78.43 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 675 | 78.45 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 681 | 78.47 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 702 | 78.48 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 736 | 78.54 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 758 | 78.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 806 | 78.60 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 889 | 78.69 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |