Os06g0332600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0332600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.25 | 0.598 | 9.23 | 0.836 | 1.79 | -1.16 | 1.09 | -2.89 | -0.417 | 20.5 | 39.49 | 129 | -- | -- |
| 172.13 | 0.611 | 9.21 | 0.799 | 1.79 | -1.01 | 0.911 | -- | -0.432 | 20.3 | 40.03 | 161 | -- | -- |
| 165.57 | 0.599 | 9.22 | 0.787 | 1.76 | -1.16 | -- | -2.47 | -0.408 | 20.5 | 39.45 | 162 | -- | -- |
| 172.89 | 0.612 | 9.21 | 0.79 | 1.77 | -1.12 | -- | -- | -0.412 | 20.5 | 40.09 | 162 | -- | -- |
| 192.62 | 0.646 | 9.14 | 0.64 | -- | -2.56 | -- | -0.0206 | -0.378 | -- | 2.039 | 932 | -- | -- |
| 187.23 | 0.641 | 9.19 | 0.792 | 1.71 | -- | 0.827 | -- | -0.352 | 19.8 | -- | -- | -- | -- |
| 189.2 | 0.644 | 9.19 | 0.77 | 1.71 | -- | -- | -- | -0.351 | 19.9 | -- | -- | -- | -- |
| 191.33 | 0.644 | 9.18 | 0.612 | -- | -2.51 | -- | -- | -0.501 | -- | 2.034 | 932 | -- | -- |
| 188.77 | 0.64 | 9.24 | -- | 1.76 | -1.11 | -- | -- | -0.493 | 20.5 | 40.02 | 162 | -- | -- |
| 347.24 | 0.871 | 9.15 | 0.751 | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
| 204.83 | 0.669 | 9.21 | -- | 1.7 | -- | -- | -- | -0.437 | 19.9 | -- | -- | -- | -- |
| 201.2 | 0.661 | 9.18 | -- | -- | -2.57 | -- | -- | -0.571 | -- | 1.92 | 941 | -- | -- |
| 362.1 | 0.888 | 9.17 | -- | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 4 | 158.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 10 | 160.45 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 6 |
| 18 | 161.06 | humidity | 80 | 270 | < th | dose independent | rect. | 1 | 13 |
| 31 | 161.69 | humidity | 70 | 90 | < th | dose independent | rect. | 19 | 20 |
| 33 | 161.80 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 41 | 162.00 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 23 |
| 58 | 162.17 | radiation | 10 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 67 | 162.48 | humidity | 80 | 270 | < th | dose independent | sin | 3 | NA |
| 79 | 162.74 | radiation | 30 | 270 | > th | dose dependent | sin | 8 | NA |
| 80 | 162.74 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 84 | 162.80 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 16 |
| 109 | 162.91 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 14 |
| 114 | 163.05 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 22 |
| 121 | 163.09 | radiation | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 129 | 163.17 | radiation | 40 | 270 | > th | dose independent | sin | 8 | NA |
| 159 | 163.28 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 3 |
| 184 | 163.39 | humidity | 90 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 263 | 163.67 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 7 |
| 264 | 163.67 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 22 |
| 266 | 163.70 | humidity | 90 | 270 | < th | dose dependent | rect. | 17 | 21 |
| 289 | 163.93 | radiation | 20 | 270 | > th | dose independent | rect. | 8 | 6 |
| 298 | 163.98 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 299 | 163.98 | humidity | 60 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 319 | 164.05 | humidity | 70 | 90 | > th | dose independent | sin | 4 | NA |
| 358 | 164.26 | radiation | 30 | 90 | < th | dose independent | rect. | 15 | 20 |
| 384 | 164.38 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 23 |
| 410 | 164.48 | humidity | 90 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 416 | 164.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 434 | 164.68 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 4 |
| 449 | 164.81 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 473 | 164.88 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 20 |
| 478 | 164.90 | humidity | 60 | 270 | > th | dose dependent | sin | 5 | NA |
| 490 | 164.92 | radiation | 40 | 270 | < th | dose independent | sin | 6 | NA |
| 511 | 165.04 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 12 |
| 542 | 165.11 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 21 |
| 566 | 165.17 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 15 |
| 569 | 165.19 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 5 |
| 589 | 165.21 | radiation | 20 | 90 | > th | dose dependent | sin | 22 | NA |
| 721 | 165.44 | radiation | 30 | 90 | > th | dose dependent | no | NA | NA |
| 887 | 165.51 | radiation | 40 | 90 | > th | dose independent | sin | 23 | NA |
| 899 | 165.54 | radiation | 40 | 90 | < th | dose independent | no | NA | NA |
| 923 | 165.59 | radiation | 20 | 270 | > th | dose independent | sin | 4 | NA |
| 942 | 165.60 | radiation | 40 | 90 | > th | dose independent | no | NA | NA |