Os06g0330100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os06g0330100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.19 | 0.661 | 4.23 | -1.49 | 0.611 | 0.367 | -1.35 | 2.19 | -0.591 | 15.9 | 33.1 | 1255 | -- | -- |
| 198.32 | 0.656 | 4.26 | -1.82 | 0.607 | 0.625 | -1.37 | -- | -0.594 | 15.9 | 33.34 | 1258 | -- | -- |
| 203.36 | 0.664 | 4.22 | -1.47 | 0.609 | 0.337 | -- | 2.63 | -0.594 | 16.2 | 33.2 | 1261 | -- | -- |
| 203.57 | 0.665 | 4.27 | -1.84 | 0.608 | 0.637 | -- | -- | -0.598 | 16.2 | 33.31 | 1255 | -- | -- |
| 223.47 | 0.696 | 4.22 | -1.46 | -- | 0.304 | -- | 2.5 | -0.606 | -- | 33.4 | 1277 | -- | -- |
| 216.89 | 0.69 | 4.29 | -1.67 | 0.538 | -- | -1.52 | -- | -0.695 | 15.9 | -- | -- | -- | -- |
| 223.07 | 0.699 | 4.29 | -1.69 | 0.545 | -- | -- | -- | -0.704 | 16.6 | -- | -- | -- | -- |
| 223.35 | 0.696 | 4.27 | -1.84 | -- | 0.567 | -- | -- | -0.624 | -- | 33.43 | 1262 | -- | -- |
| 289.95 | 0.793 | 4.23 | -- | 0.614 | 0.453 | -- | -- | -0.433 | 16.1 | 34.1 | 1229 | -- | -- |
| 238.88 | 0.722 | 4.29 | -1.71 | -- | -- | -- | -- | -0.718 | -- | -- | -- | -- | -- |
| 298.58 | 0.808 | 4.25 | -- | 0.576 | -- | -- | -- | -0.515 | 16.5 | -- | -- | -- | -- |
| 310.36 | 0.821 | 4.23 | -- | -- | 0.374 | -- | -- | -0.464 | -- | 34.1 | 1220 | -- | -- |
| 316.33 | 0.83 | 4.25 | -- | -- | -- | -- | -- | -0.528 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.53 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 2 | 196.95 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 17 | 197.19 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 32 | 197.28 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 46 | 197.30 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 6 |
| 50 | 197.52 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 80 | 197.85 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 118 | 199.02 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 143 | 199.67 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 179 | 199.93 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 186 | 199.99 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 187 | 199.99 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 188 | 200.01 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 190 | 200.02 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 193 | 200.04 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 210 | 200.13 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 211 | 200.14 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 227 | 200.21 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 228 | 200.21 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 248 | 200.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 267 | 200.42 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 269 | 200.45 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 271 | 200.46 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 275 | 200.52 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 298 | 200.57 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 302 | 200.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 311 | 200.67 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 330 | 200.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 422 | 201.24 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 424 | 201.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 455 | 201.39 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 460 | 201.40 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 489 | 201.46 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 591 | 201.62 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 628 | 201.68 | wind | 1.0 | 43200 | > th | dose dependent | sin | 7 | NA |
| 654 | 201.70 | humidity | 70.0 | 720 | < th | dose independent | sin | 12 | NA |
| 657 | 201.70 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 689 | 201.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 694 | 201.74 | wind | 9.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 695 | 201.74 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 841 | 201.85 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 919 | 201.93 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 998 | 202.02 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 6 |