Os06g0329700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os06g0329700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.89 | 0.325 | 3.29 | 0.204 | 0.224 | 0.255 | -0.319 | 1.26 | -0.0344 | 6.87 | 90.81 | 5900 | -- | -- |
| 50.18 | 0.33 | 3.28 | 0.141 | 0.251 | 0.28 | -0.338 | -- | -0.0517 | 6.97 | 102.9 | 6409 | -- | -- |
| 48.14 | 0.323 | 3.29 | 0.206 | 0.222 | 0.261 | -- | 1.28 | -0.0354 | 7.05 | 91 | 5913 | -- | -- |
| 50.24 | 0.33 | 3.29 | 0.114 | 0.262 | 0.312 | -- | -- | -0.0734 | 6.97 | 118.1 | 4831 | -- | -- |
| 50.73 | 0.332 | 3.29 | 0.206 | -- | 0.259 | -- | 1.27 | -0.0288 | -- | 91 | 5836 | -- | -- |
| 51.26 | 0.336 | 3.27 | 0.1 | 0.222 | -- | -0.34 | -- | -0.002 | 6.79 | -- | -- | -- | -- |
| 51.54 | 0.336 | 3.27 | 0.0954 | 0.221 | -- | -- | -- | -0.000754 | 7.08 | -- | -- | -- | -- |
| 52.87 | 0.339 | 3.29 | 0.115 | -- | 0.318 | -- | -- | -0.0631 | -- | 114.4 | 4301 | -- | -- |
| 50.58 | 0.331 | 3.29 | -- | 0.26 | 0.303 | -- | -- | -0.0849 | 6.95 | 148.8 | 4826 | -- | -- |
| 54.12 | 0.344 | 3.28 | 0.0997 | -- | -- | -- | -- | 0.00322 | -- | -- | -- | -- | -- |
| 51.78 | 0.337 | 3.27 | -- | 0.222 | -- | -- | -- | -0.0114 | 7.06 | -- | -- | -- | -- |
| 53.17 | 0.34 | 3.29 | -- | -- | 0.295 | -- | -- | -0.0599 | -- | 88 | 4279 | -- | -- |
| 54.38 | 0.344 | 3.28 | -- | -- | -- | -- | -- | -0.00784 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.87 | humidity | 80 | 10 | < th | dose independent | rect. | 6 | 2 |
| 3 | 44.93 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 6 | 45.23 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 9 |
| 30 | 46.12 | radiation | 10 | 10 | > th | dose independent | rect. | 16 | 16 |
| 53 | 46.76 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 1 |
| 57 | 47.14 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 64 | 47.41 | humidity | 90 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 68 | 47.59 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 73 | 47.65 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 8 | 23 |
| 76 | 47.69 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 80 | 47.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 81 | 47.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 92 | 47.74 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 107 | 47.76 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 118 | 47.90 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 16 |
| 139 | 47.96 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 23 |
| 146 | 47.99 | humidity | 80 | 4320 | > th | dose independent | rect. | 7 | 6 |
| 147 | 47.99 | humidity | 80 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 158 | 48.02 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 161 | 48.03 | humidity | 70 | 4320 | > th | dose dependent | rect. | 4 | 8 |
| 173 | 48.05 | humidity | 50 | 4320 | > th | dose dependent | rect. | 3 | 12 |
| 175 | 48.05 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 196 | 48.08 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 203 | 48.09 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 214 | 48.10 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 216 | 48.10 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 7 | 1 |
| 219 | 48.10 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 226 | 48.10 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 17 |
| 242 | 48.11 | humidity | 50 | 4320 | > th | dose dependent | sin | 4 | NA |
| 267 | 48.13 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 21 | 23 |
| 273 | 48.13 | humidity | 90 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 315 | 48.16 | humidity | 80 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 333 | 48.17 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 21 |
| 353 | 48.18 | humidity | 70 | 4320 | > th | dose independent | sin | 3 | NA |
| 398 | 48.19 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 8 | 11 |
| 411 | 48.19 | humidity | 90 | 4320 | < th | dose dependent | sin | 4 | NA |
| 515 | 48.22 | humidity | 90 | 90 | < th | dose independent | rect. | 1 | 20 |
| 518 | 48.22 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 611 | 48.25 | radiation | 10 | 10 | > th | dose independent | sin | 11 | NA |
| 682 | 48.27 | humidity | 70 | 4320 | < th | dose independent | sin | 3 | NA |
| 750 | 48.28 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 920 | 48.34 | wind | 5 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 921 | 48.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 922 | 48.34 | humidity | 80 | 4320 | < th | dose dependent | rect. | 14 | 1 |