Os06g0329300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0329300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.4 | 0.48 | 8.62 | 0.0121 | 0.802 | -1.68 | -0.254 | -4.83 | 0.661 | 3.66 | 1.378 | 11567 | -- | -- |
| 135.65 | 0.542 | 8.48 | 0.982 | 0.739 | -1.17 | -0.355 | -- | 1.06 | 3.69 | 10.01 | 8735 | -- | -- |
| 104.59 | 0.476 | 8.62 | 0.0156 | 0.8 | -1.68 | -- | -4.83 | 0.661 | 3.63 | 1.378 | 11567 | -- | -- |
| 131.92 | 0.535 | 8.5 | 1.1 | 0.639 | -1.15 | -- | -- | 0.874 | 3.13 | 10 | 12267 | -- | -- |
| 128.12 | 0.527 | 8.54 | 0.159 | -- | -1.28 | -- | -4.57 | 0.669 | -- | 4.64 | 7693 | -- | -- |
| 167.19 | 0.606 | 8.58 | 0.86 | 0.768 | -- | -0.247 | -- | 0.555 | 3.59 | -- | -- | -- | -- |
| 167.38 | 0.606 | 8.58 | 0.864 | 0.766 | -- | -- | -- | 0.556 | 3.55 | -- | -- | -- | -- |
| 144.73 | 0.56 | 8.57 | 1.04 | -- | -1.51 | -- | -- | 0.746 | -- | 2.333 | 7702 | -- | -- |
| 155.96 | 0.582 | 8.53 | -- | 0.827 | -0.988 | -- | -- | 0.789 | 3.52 | 22.04 | 8701 | -- | -- |
| 200.1 | 0.661 | 8.58 | 0.896 | -- | -- | -- | -- | 0.576 | -- | -- | -- | -- | -- |
| 187.06 | 0.64 | 8.6 | -- | 0.783 | -- | -- | -- | 0.46 | 3.55 | -- | -- | -- | -- |
| 165.4 | 0.599 | 8.57 | -- | -- | -1.62 | -- | -- | 0.752 | -- | 2.48 | 7700 | -- | -- |
| 221.3 | 0.694 | 8.6 | -- | -- | -- | -- | -- | 0.477 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.55 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 2 | 98.66 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 5 | 98.83 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 6 | 98.94 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 27 | 100.93 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 42 | 100.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 46 | 101.06 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 47 | 101.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 48 | 101.13 | radiation | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 50 | 101.17 | radiation | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 52 | 101.26 | temperature | 30 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 55 | 101.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 56 | 101.31 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 57 | 101.32 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 66 | 101.38 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 69 | 101.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 76 | 101.44 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 77 | 101.45 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 88 | 101.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 92 | 101.49 | radiation | 40 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 108 | 101.57 | radiation | 10 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 111 | 101.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 113 | 101.60 | temperature | 30 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 137 | 101.63 | radiation | 1 | 14400 | < th | dose independent | sin | 20 | NA |
| 143 | 101.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 151 | 101.69 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 169 | 101.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 11 |
| 171 | 101.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 206 | 101.78 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 253 | 101.90 | radiation | 20 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 294 | 102.00 | radiation | 1 | 14400 | > th | dose independent | sin | 19 | NA |
| 296 | 102.00 | radiation | 1 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 297 | 102.01 | temperature | 30 | 14400 | < th | dose independent | sin | 7 | NA |
| 314 | 102.05 | radiation | 10 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 342 | 102.12 | temperature | 25 | 14400 | > th | dose dependent | sin | 8 | NA |
| 354 | 102.14 | temperature | 30 | 14400 | > th | dose independent | sin | 7 | NA |
| 373 | 102.19 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 376 | 102.20 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 383 | 102.21 | radiation | 10 | 14400 | < th | dose dependent | rect. | 13 | 19 |
| 384 | 102.22 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 391 | 102.23 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 402 | 102.26 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 405 | 102.27 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 406 | 102.27 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 422 | 102.29 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 425 | 102.32 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 428 | 102.33 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 434 | 102.33 | radiation | 20 | 14400 | < th | dose dependent | sin | 12 | NA |
| 435 | 102.34 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 469 | 102.41 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 525 | 102.47 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 527 | 102.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 548 | 102.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 622 | 102.58 | radiation | 40 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 623 | 102.58 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 654 | 102.69 | radiation | 20 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 684 | 102.72 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 686 | 102.73 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 736 | 102.75 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 745 | 102.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 764 | 102.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 802 | 102.85 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 803 | 102.86 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 807 | 102.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 21 |
| 827 | 102.88 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 828 | 102.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 830 | 102.88 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 841 | 102.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 957 | 103.03 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 963 | 103.04 | radiation | 40 | 4320 | > th | dose independent | rect. | 14 | 20 |
| 994 | 103.07 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 1 |